Literature DB >> 2009354

Conformational relaxation of a low-temperature protein as probed by photochemical hole burning. Horseradish peroxidase.

J Zollfrank1, J Friedrich, J M Vanderkooi, J Fidy.   

Abstract

For the first time, conformational relaxation processes have been measured in a small protein, mesoporphyrin-horseradish peroxidase via their influence on spectral diffusion broadening of holes burnt in the fluorescence excitation spectrum of free base mesoporphyrin. Holes were burnt in three 0----0 bands of different tautomeric forms of the chromophore at 1.5 and 4 K, and the spectral diffusion broadening was measured in temperature cycling experiments between 4 and 30 K. The inhomogeneous linewidth for the tautomeric 0----0 bands was estimated to be 60-70 cm-1; the hole width was found narrow, being in the order of 350 MHz (10(-2) cm-1) at 1.5 K what allowed for an extremely sensitive detection of the conformational changes. Though proteins have many features in common with glasses, the spectral diffusion broadening of photochemical holes under temperature cycling conditions in mesoporphyrin horseradish peroxidase has a very different pattern as a function of temperature. Up to 12 K, the linewidth did not significantly change, then around 14 K; a steplike broadening was observed for all three tautomers, although to a different extent. The total magnitude of line broadening up to 30 K was large and also different for the tautomers. We argue that the difference between the behavior of this protein and that of glassy matrices originate from finite size effects; the protein may be characterized by a small number of TLS, and their distribution may bear discrete features.

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Year:  1991        PMID: 2009354      PMCID: PMC1281147          DOI: 10.1016/S0006-3495(91)82224-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

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Authors:  J M Vanderkooi; V T Moy; G Maniara; H Koloczek; K G Paul
Journal:  Biochemistry       Date:  1985-12-31       Impact factor: 3.162

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Journal:  Biophys J       Date:  1985-08       Impact factor: 4.033

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Journal:  Biochem J       Date:  1983-03-01       Impact factor: 3.857

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Journal:  CRC Crit Rev Biochem       Date:  1981

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Authors:  J Fidy; K G Paul; J M Vanderkooi
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

10.  Rebinding and relaxation in the myoglobin pocket.

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Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

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  13 in total

1.  Aging dynamics in globular proteins: summary and analysis of experimental results and simulation by a modified trap model.

Authors:  Levente Herenyi; Krisztian Szigeti; Judit Fidy; Tamas Temesvari; Jorg Schlichter; Josef Friedrich
Journal:  Eur Biophys J       Date:  2003-09-03       Impact factor: 1.733

2.  Softening of the packing density of horseradish peroxidase by a H-donor bound near the heme pocket.

Authors:  J Fidy; J M Vanderkooi; J Zollfrank; J Friedrich
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

3.  Electron transfer and protein dynamics in the photosynthetic reaction center.

Authors:  B H McMahon; J D Müller; C A Wraight; G U Nienhaus
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

4.  Spectral diffusion and the energy landscape of a protein.

Authors:  K Fritsch; J Friedrich; F Parak; J L Skinner
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

5.  Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

Authors:  K Akasaka; H Li; H Yamada; R Li; T Thoresen; C K Woodward
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

6.  Stark-effect experiments on photochemical holes in chromoproteins: protoporphyrin IX-substituted myoglobin.

Authors:  J Gafert; J Friedrich; F Parak
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-14       Impact factor: 11.205

7.  15N and 1H NMR study of histidine containing protein (HPr) from Staphylococcus carnosus at high pressure.

Authors:  H R Kalbitzer; A Görler; H Li; P V Dubovskii; W Hengstenberg; C Kowolik; H Yamada; K Akasaka
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

8.  The photoexcited triplet state as a probe of chromophore-protein interaction in myoglobin.

Authors:  P J Angiolillo; J M Vanderkooi
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

9.  Electron paramagnetic resonance of the excited triplet state of metal-free and metal-substituted cytochrome c.

Authors:  P J Angiolillo; J M Vanderkooi
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

10.  More than two pyrrole tautomers of mesoporphyrin stabilized by a protein. High resolution optical spectroscopic study.

Authors:  J Fidy; J M Vanderkooi; J Zollfrank; J Friedrich
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

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