Literature DB >> 2296572

Temperature-derivative spectroscopy: a tool for protein dynamics.

J Berendzen1, D Braunstein.   

Abstract

A relaxation method that measures the derivative of a population with respect to temperature is introduced and used to study the recombination of CO to sperm whale myoglobin after a photolyzing flash. Measurement of the geminate process in the infrared CO-stretch bands shows distributed activation enthalpies with different distributions for each band, transitions between two bands that correspond to photolyzed ligands, and kinetic hole burning. The data are well described by gaussian enthalpy distributions; the results match and complement those of isothermal methods. The temperature-derivative technique is further used to explore the recombination of CO from outside the heme pocket.

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Year:  1990        PMID： 2296572      PMCID： PMC53187          DOI： 10.1073/pnas.87.1.1

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  15 in total

1.  Glassy behavior of a protein.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-04-17       Impact factor: 9.161

2.  A model of protein conformational substates.

Authors:  D L Stein
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

3.  Thermal-stimulated pressure and current studies of bound water in lysozyme.

Authors:  S Celaschi; S Mascarenhas
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

4.  Orientation of carbon monoxide and structure-function relationship in carbonmonoxymyoglobin.

Authors:  P Ormos; D Braunstein; H Frauenfelder; M K Hong; S L Lin; T B Sauke; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

Review 5.  Enzyme dynamics: the statistical physics approach.

Authors:  G Careri; P Fasella; E Gratton
Journal:  Annu Rev Biophys Bioeng       Date:  1979

6.  Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin.

Authors:  B F Campbell; M R Chance; J M Friedman
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

7.  Fluorescence lifetime distributions in proteins.

Authors:  J R Alcala; E Gratton; F G Prendergast
Journal:  Biophys J       Date:  1987-04       Impact factor: 4.033

8.  Nanosecond flash photolysis study of carbon monoxide binding to the beta chain of hemoglobin Zürich [beta 63(E7)His leads to Arg].

Authors:  D D Dlott; H Frauenfelder; P Langer; H Roder; E E DiIorio
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

9.  Infrared spectroscopy of photodissociated carboxymyoglobin at low temperatures.

Authors:  J O Alben; D Beece; S F Bowne; W Doster; L Eisenstein; H Frauenfelder; D Good; J D McDonald; M C Marden; P P Moh; L Reinisch; A H Reynolds; E Shyamsunder; K T Yue
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

10.  Rebinding and relaxation in the myoglobin pocket.

Authors:  A Ansari; J Berendzen; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; J B Johnson; P Ormos; T B Sauke
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352
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  31 in total

1.  The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Authors:  Karin Nienhaus; Don C Lamb; Pengchi Deng; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Kinetic evidence for three photolyzable taxonomic conformational substates in oxymyoglobin.

Authors:  Catherine Tetreau; Eugene Novikov; Martine Tourbez; Daniel Lavalette
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

3.  Aging dynamics in globular proteins: summary and analysis of experimental results and simulation by a modified trap model.

Authors:  Levente Herenyi; Krisztian Szigeti; Judit Fidy; Tamas Temesvari; Jorg Schlichter; Josef Friedrich
Journal:  Eur Biophys J       Date:  2003-09-03       Impact factor: 1.733

4.  Conformational substates in azurin.

Authors:  D Ehrenstein; G U Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

5.  Determination of rate distributions from kinetic experiments.

Authors:  P J Steinbach; K Chu; H Frauenfelder; J B Johnson; D C Lamb; G U Nienhaus; T B Sauke; R D Young
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

6.  Transient ligand docking sites in Cerebratulus lacteus mini-hemoglobin.

Authors:  Pengchi Deng; Karin Nienhaus; Pasquale Palladino; John S Olson; George Blouin; Luc Moens; Sylvia Dewilde; Eva Geuens; G Ulrich Nienhaus
Journal:  Gene       Date:  2007-04-29       Impact factor: 3.688

7.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

8.  An engineered heme-copper center in myoglobin: CO migration and binding.

Authors:  Karin Nienhaus; John S Olson; G Ulrich Nienhaus
Journal:  Biochim Biophys Acta       Date:  2013-02-28

9.  More than two pyrrole tautomers of mesoporphyrin stabilized by a protein. High resolution optical spectroscopic study.

Authors:  J Fidy; J M Vanderkooi; J Zollfrank; J Friedrich
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

10.  Charge density-dependent modifications of hydration shell waters by Hofmeister ions.

Authors:  Feng Guo; Joel M Friedman
Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419
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