Literature DB >> 10548039

Pressure response of protein backbone structure. Pressure-induced amide 15N chemical shifts in BPTI.

K Akasaka1, H Li, H Yamada, R Li, T Thoresen, C K Woodward.   

Abstract

The effect of pressure on amide 15N chemical shifts was studied in uniformly 15N-labeled basic pancreatic trypsin inhibitor (BPTI) in 90%1H2O/10%2H2O, pH 4.6, by 1H-15N heteronuclear correlation spectroscopy between 1 and 2,000 bar. Most 15N signals were low field shifted linearly and reversibly with pressure (0.468 +/- 0.285 ppm/2 kbar), indicating that the entire polypeptide backbone structure is sensitive to pressure. A significant variation of shifts among different amide groups (0-1.5 ppm/2 kbar) indicates a heterogeneous response throughout within the three-dimensional structure of the protein. A tendency toward low field shifts is correlated with a decrease in hydrogen bond distance on the order of 0.03 A/2 kbar for the bond between the amide nitrogen atom and the oxygen atom of either carbonyl or water. The variation of 15N shifts is considered to reflect site-specific changes in phi, psi angles. For beta-sheet residues, a decrease in psi angles by 1-2 degrees/2 kbar is estimated. On average, shifts are larger for helical and loop regions (0.553 +/- 0.343 and 0.519 +/- 0.261 ppm/2 kbar, respectively) than for beta-sheet (0.295 +/- 0.195 ppm/2 kbar), suggesting that the pressure-induced structural changes (local compressibilities) are larger in helical and loop regions than in beta-sheet. Because compressibility is correlated with volume fluctuation, the result is taken to indicate that the volume fluctuation is larger in helical and loop regions than in beta-sheet. An important aspect of the volume fluctuation inferred from pressure shifts is that they include motions in slower time ranges (less than milliseconds) in which many biological processes may take place.

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Year:  1999        PMID: 10548039      PMCID: PMC2144150          DOI: 10.1110/ps.8.10.1946

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  46 in total

1.  Local stability and dynamics of apocytochrome b562 examined by the dependence of hydrogen exchange on hydrostatic pressure.

Authors:  E J Fuentes; A J Wand
Journal:  Biochemistry       Date:  1998-07-14       Impact factor: 3.162

2.  Structural characterization of the pressure-denatured state and unfolding/refolding kinetics of staphylococcal nuclease by synchrotron small-angle X-ray scattering and Fourier-transform infrared spectroscopy.

Authors:  G Panick; R Malessa; R Winter; G Rapp; K J Frye; C A Royer
Journal:  J Mol Biol       Date:  1998-01-16       Impact factor: 5.469

3.  Kinetic hole burning, hole filling, and conformational relaxation in heme proteins: direct evidence for the functional significance of a hierarchy of dynamical processes.

Authors:  J Huang; A Ridsdale; J Wang; J M Friedman
Journal:  Biochemistry       Date:  1997-11-25       Impact factor: 3.162

4.  Pressure dependence of amide hydrogen-deuterium exchange rates for individual sites in T4 lysozyme.

Authors:  T K Hitchens; R G Bryant
Journal:  Biochemistry       Date:  1998-04-28       Impact factor: 3.162

5.  Pressure denaturation of proteins: evaluation of compressibility effects.

Authors:  K E Prehoda; E S Mooberry; J L Markley
Journal:  Biochemistry       Date:  1998-04-28       Impact factor: 3.162

6.  Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: additivity scheme and implication of protein unfolding at normal and high pressure.

Authors:  D P Kharakoz
Journal:  Biochemistry       Date:  1997-08-19       Impact factor: 3.162

7.  Pressure-induced changes in the folded structure of lysozyme.

Authors:  K Akasaka; T Tezuka; H Yamada
Journal:  J Mol Biol       Date:  1997-09-05       Impact factor: 5.469

8.  Mechanical property of a TIM-barrel protein.

Authors:  N Kobayashi; T Yamato; N Go
Journal:  Proteins       Date:  1997-05

9.  Secretion efficiency in Saccharomyces cerevisiae of bovine pancreatic trypsin inhibitor mutants lacking disulfide bonds is correlated with thermodynamic stability.

Authors:  J M Kowalski; R N Parekh; K D Wittrup
Journal:  Biochemistry       Date:  1998-02-03       Impact factor: 3.162

10.  Effect of pressure on individual hydrogen bonds in proteins. Basic pancreatic trypsin inhibitor.

Authors:  H Li; H Yamada; K Akasaka
Journal:  Biochemistry       Date:  1998-02-03       Impact factor: 3.162

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  22 in total

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Authors:  M Iwadate; T Asakura; P V Dubovskii; H Yamada; K Akasaka; M P Williamson
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2.  A model of the pressure dependence of the enantioselectivity of Candida rugosalipase towards (+/-)-menthol.

Authors:  U H Kahlow; R D Schmid; J Pleiss
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

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4.  High-pressure 1H NMR study of pressure-induced structural changes in the heme environments of metcyanomyoglobins.

Authors:  Ryo Kitahara; Minoru Kato; Yoshihiro Taniguchi
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

5.  Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.

Authors:  Eric Girard; Stéphane Marchal; Javier Perez; Stéphanie Finet; Richard Kahn; Roger Fourme; Guillaume Marassio; Anne-Claire Dhaussy; Thierry Prangé; Marion Giffard; Fabienne Dulin; Françoise Bonneté; Reinhard Lange; Jacques H Abraini; Mohamed Mezouar; Nathalie Colloc'h
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

6.  Structural and mechanical properties of TTR105-115 amyloid fibrils from compression experiments.

Authors:  Filip Meersman; Raúl Quesada Cabrera; Paul F McMillan; Vladimir Dmitriev
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

7.  Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Maya J Pandya; Mike P Williamson
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

8.  NMR-based characterization of a refolding intermediate of beta2-microglobulin labeled using a wheat germ cell-free system.

Authors:  Atsushi Kameda; Eugene-Hayato Morita; Kazumasa Sakurai; Hironobu Naiki; Yuji Goto
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

9.  Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme.

Authors:  Akihiro Maeno; Daniel Sindhikara; Fumio Hirata; Renee Otten; Frederick W Dahlquist; Shigeyuki Yokoyama; Kazuyuki Akasaka; Frans A A Mulder; Ryo Kitahara
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

10.  A delicate interplay of structure, dynamics, and thermodynamics for function: a high pressure NMR study of outer surface protein A.

Authors:  Ryo Kitahara; Alana K Simorellis; Kazumi Hata; Akihiro Maeno; Shigeyuki Yokoyama; Shohei Koide; Kazuyuki Akasaka
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

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