Literature DB >> 6870784

Low-frequency vibrations of helical structures in protein molecules.

K C Chou.   

Abstract

A physically intuitive and mathematically easily handled formula is presented for calculating the low-frequency vibrations of helical structures in protein molecules. alpha-Chymotrypsin is taken as an example, and the calculated result shows precise agreement with observations of the low-frequency Raman spectra. As reflected in the formula, this kind of low frequency is very sensitive to the conformation of a biomacromolecule, and can therefore serve as a vehicle to investigate the mechanism of action of a biomacromolecule from the viewpoint of dynamics. On this basis a feasible experiment is suggested by which one can examine the relationship between a presumed mode of low-frequency vibration in a biomacromolecule and its activity.

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Year:  1983        PMID: 6870784      PMCID: PMC1154133          DOI: 10.1042/bj2090573

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  10 in total

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Authors:  K G Brown; S C Erfurth; E W Small; W L Peticolas
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

5.  Phonon dispersion curves and normal coordinate analysis of -poly-L-alanine.

Authors:  B Fanconi; E W Small; W L Peticolas
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

6.  Structure of crystalline -chymotrypsin. V. The atomic structure of tosyl- -chymotrypsin at 2 A resolution.

Authors:  J J Birktoft; D M Blow
Journal:  J Mol Biol       Date:  1972-07-21       Impact factor: 5.469

7.  Simplified force field calculations of the low-frequency motions of the alpha-helix.

Authors:  B Fanconi; W L Peticolas
Journal:  Biopolymers       Date:  1971-11       Impact factor: 2.505

8.  Vibrational frequencies and modes of alpha-helix.

Authors:  K Ito; T Shimanouchi
Journal:  Biopolymers       Date:  1970       Impact factor: 2.505

9.  Structural and energetic considerations of wave propagation in DNA.

Authors:  H M Sobell; E D Lozansky; M Lessen
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1979

10.  Protein structural fluctuations during a period of 100 ps.

Authors:  M Karplus; J A McCammon
Journal:  Nature       Date:  1979-02-15       Impact factor: 49.962

  10 in total
  9 in total

1.  Activation volume and energetic properties of the binding of CO to hemoproteins.

Authors:  R Lange; I Heiber-Langer; C Bonfils; I Fabre; M Negishi; C Balny
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

2.  Low-frequency vibrations of DNA molecules.

Authors:  K C Chou
Journal:  Biochem J       Date:  1984-07-01       Impact factor: 3.857

3.  Low-frequency motions in protein molecules. Beta-sheet and beta-barrel.

Authors:  K C Chou
Journal:  Biophys J       Date:  1985-08       Impact factor: 4.033

4.  Conformational relaxation of a low-temperature protein as probed by photochemical hole burning. Horseradish peroxidase.

Authors:  J Zollfrank; J Friedrich; J M Vanderkooi; J Fidy
Journal:  Biophys J       Date:  1991-02       Impact factor: 4.033

5.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

6.  Trends in global warming and evolution of matrix protein 2 family from influenza A virus.

Authors:  Shao-Min Yan; Guang Wu
Journal:  Interdiscip Sci       Date:  2009-11-14       Impact factor: 2.233

7.  Characterization of the relationship between FLI1 and immune infiltrate level in tumour immune microenvironment for breast cancer.

Authors:  Shiyuan Wang; Yakun Wang; Chunlu Yu; Yiyin Cao; Yao Yu; Yi Pan; Dongqing Su; Qianzi Lu; Wuritu Yang; Yongchun Zuo; Lei Yang
Journal:  J Cell Mol Med       Date:  2020-04-05       Impact factor: 5.310

8.  Scoring function for DNA-drug docking of anticancer and antiparasitic compounds based on spectral moments of 2D lattice graphs for molecular dynamics trajectories.

Authors:  Lázaro G Pérez-Montoto; Lourdes Santana; Humberto González-Díaz
Journal:  Eur J Med Chem       Date:  2009-06-17       Impact factor: 6.514

9.  QSAR for RNases and theoretic-experimental study of molecular diversity on peptide mass fingerprints of a new Leishmania infantum protein.

Authors:  Humberto González-Díaz; María A Dea-Ayuela; Lázaro G Pérez-Montoto; Francisco J Prado-Prado; Guillermín Agüero-Chapín; Francisco Bolas-Fernández; Roberto I Vazquez-Padrón; Florencio M Ubeira
Journal:  Mol Divers       Date:  2009-07-04       Impact factor: 2.943

  9 in total

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