Literature DB >> 20041641

High-resolution solid-state NMR structure of a 17.6 kDa protein.

Ivano Bertini1, Anusarka Bhaumik, Gaël De Paëpe, Robert G Griffin, Moreno Lelli, Józef R Lewandowski, Claudio Luchinat.   

Abstract

The use of pseudocontact shifts arising from paramagnetic metal ions in a microcrystalline protein sample is proposed as a strategy to obtain unambiguous signal assignments in solid-state NMR spectra enabling distance extraction for protein structure calculation. With this strategy, 777 unambiguous (281 sequential, 217 medium-range, and 279 long-range) distance restraints could be obtained from PDSD, DARR, CHHC, and the recently introduced PAR and PAIN-CP solid-state experiments for the cobalt(II)-substituted catalytic domain of matrix metalloproteinase 12 (159 amino acids, 17.6 kDa). The obtained structure is a high resolution one, with backbone rmsd of 1.0 +/- 0.2 A, and is in good agreement with the X-ray structure (rmsd to X-ray 1.3 A). The proposed strategy, which may be generalized for nonmetalloproteins with the use of paramagnetic tags, represents a significant step ahead in protein structure determination using solid-state NMR.

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Year:  2010        PMID: 20041641      PMCID: PMC4437541          DOI: 10.1021/ja906426p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  68 in total

1.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

2.  Proton assisted insensitive nuclei cross polarization.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-01-31       Impact factor: 15.419

3.  Paramagnetic ions provide structural restraints in solid-state NMR of proteins.

Authors:  Stéphane Balayssac; Ivano Bertini; Moreno Lelli; Claudio Luchinat; Massimiliano Maletta
Journal:  J Am Chem Soc       Date:  2007-02-01       Impact factor: 15.419

4.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

Review 5.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
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8.  J-deconvolution using maximum entropy reconstruction applied to 13C-13C solid-state cross-polarization magic-angle-spinning NMR of proteins.

Authors:  Ingo Scholz; Stefan Jehle; Peter Schmieder; Matthias Hiller; Frank Eisenmenger; Hartmut Oschkinat; Barth-Jan van Rossum
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

9.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

10.  Spin dynamics in the modulation frame: application to homonuclear recoupling in magic angle spinning solid-state NMR.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-03-28       Impact factor: 3.488

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  38 in total

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Authors:  Michael C Brothers; Anna E Nesbitt; Michael J Hallock; Sanjeewa G Rupasinghe; Ming Tang; Jason Harris; Jerome Baudry; Mary A Schuler; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-11-03       Impact factor: 2.835

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Authors:  Anders B Nielsen; Kathrin Székely; Julia Gath; Matthias Ernst; Niels Chr Nielsen; Beat H Meier
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3.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

4.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

5.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

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Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

6.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

7.  Protein structural studies by paramagnetic solid-state NMR spectroscopy aided by a compact cyclen-type Cu(II) binding tag.

Authors:  Ishita Sengupta; Min Gao; Rajith J Arachchige; Philippe S Nadaud; Timothy F Cunningham; Sunil Saxena; Charles D Schwieters; Christopher P Jaroniec
Journal:  J Biomol NMR       Date:  2014-11-29       Impact factor: 2.835

8.  A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions.

Authors:  Davide Sala; Andrea Giachetti; Claudio Luchinat; Antonio Rosato
Journal:  J Biomol NMR       Date:  2016-10-22       Impact factor: 2.835

9.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

10.  On the use of ultracentrifugal devices for sedimented solute NMR.

Authors:  Ivano Bertini; Frank Engelke; Leonardo Gonnelli; Benno Knott; Claudio Luchinat; David Osen; Enrico Ravera
Journal:  J Biomol NMR       Date:  2012-08-08       Impact factor: 2.835

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