Literature DB >> 25432438

Protein structural studies by paramagnetic solid-state NMR spectroscopy aided by a compact cyclen-type Cu(II) binding tag.

Ishita Sengupta1, Min Gao, Rajith J Arachchige, Philippe S Nadaud, Timothy F Cunningham, Sunil Saxena, Charles D Schwieters, Christopher P Jaroniec.   

Abstract

Paramagnetic relaxation enhancements (PREs) are a rich source of structural information in protein solid-state NMR spectroscopy. Here we demonstrate that PRE measurements in natively diamagnetic proteins are facilitated by a thiol-reactive compact, cyclen-based, high-affinity Cu(2+) binding tag, 1-[2-(pyridin-2-yldisulfanyl)ethyl]-1,4,7,10-tetraazacyclododecane (TETAC), that overcomes the key shortcomings associated with the use of larger, more flexible metal-binding tags. Using the TETAC-Cu(2+) K28C mutant of B1 immunoglobulin-binding domain of protein G as a model, we find that amino acid residues located within ~10 Å of the Cu(2+) center experience considerable transverse PREs leading to severely attenuated resonances in 2D (15)N-(13)C correlation spectra. For more distant residues, electron-nucleus distances are accessible via quantitative measurements of longitudinal PREs, and we demonstrate such measurements for (15)N-Cu(2+) distances up to ~20 Å.

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Year:  2014        PMID: 25432438      PMCID: PMC4304965          DOI: 10.1007/s10858-014-9880-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  44 in total

1.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

2.  Rapid acquisition of multidimensional solid-state NMR spectra of proteins facilitated by covalently bound paramagnetic tags.

Authors:  Philippe S Nadaud; Jonathan J Helmus; Ishita Sengupta; Christopher P Jaroniec
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

3.  Paramagnetic metal ions in pulsed ESR distance distribution measurements.

Authors:  Ming Ji; Sharon Ruthstein; Sunil Saxena
Journal:  Acc Chem Res       Date:  2013-12-02       Impact factor: 22.384

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Lanthanide tags for site-specific ligation to an unnatural amino acid and generation of pseudocontact shifts in proteins.

Authors:  Choy Theng Loh; Kiyoshi Ozawa; Kellie L Tuck; Nicholas Barlow; Thomas Huber; Gottfried Otting; Bim Graham
Journal:  Bioconjug Chem       Date:  2013-01-16       Impact factor: 4.774

6.  Evaluation of the influence of intermolecular electron-nucleus couplings and intrinsic metal binding sites on the measurement of 15N longitudinal paramagnetic relaxation enhancements in proteins by solid-state NMR.

Authors:  Philippe S Nadaud; Ishita Sengupta; Jonathan J Helmus; Christopher P Jaroniec
Journal:  J Biomol NMR       Date:  2011-08-09       Impact factor: 2.835

Review 7.  Solid-state NMR studies of amyloid fibril structure.

Authors:  Robert Tycko
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

8.  Backbone conformational constraints in a microcrystalline U-15N-labeled protein by 3D dipolar-shift solid-state NMR spectroscopy.

Authors:  W Trent Franks; Benjamin J Wylie; Sara A Stellfox; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

9.  Refined distances between paramagnetic centers of a multi-copper nitrite reductase determined by pulsed EPR (iDEER) spectroscopy.

Authors:  Jessica H van Wonderen; Dorota N Kostrz; Christopher Dennison; Fraser MacMillan
Journal:  Angew Chem Int Ed Engl       Date:  2013-01-07       Impact factor: 15.336

10.  Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy.

Authors:  Ishita Sengupta; Philippe S Nadaud; Jonathan J Helmus; Charles D Schwieters; Christopher P Jaroniec
Journal:  Nat Chem       Date:  2012-03-18       Impact factor: 24.427

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  9 in total

1.  Rapid Quantitative Measurements of Paramagnetic Relaxation Enhancements in Cu(II)-Tagged Proteins by Proton-Detected Solid-State NMR Spectroscopy.

Authors:  Dwaipayan Mukhopadhyay; Philippe S Nadaud; Matthew D Shannon; Christopher P Jaroniec
Journal:  J Phys Chem Lett       Date:  2017-11-20       Impact factor: 6.475

2.  Structural studies of proteins by paramagnetic solid-state NMR spectroscopy.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

3.  The Target of β-Expansin EXPB1 in Maize Cell Walls from Binding and Solid-State NMR Studies.

Authors:  Tuo Wang; Yuning Chen; Akira Tabuchi; Daniel J Cosgrove; Mei Hong
Journal:  Plant Physiol       Date:  2016-10-11       Impact factor: 8.340

4.  Cysteine-specific Cu2+ chelating tags used as paramagnetic probes in double electron electron resonance.

Authors:  Timothy F Cunningham; Matthew D Shannon; Miriam R Putterman; Rajith J Arachchige; Ishita Sengupta; Min Gao; Christopher P Jaroniec; Sunil Saxena
Journal:  J Phys Chem B       Date:  2015-01-30       Impact factor: 2.991

Review 5.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

6.  ESR Resolves the C Terminus Structure of the Ligand-free Human Glutathione S-Transferase A1-1.

Authors:  Matthew J Lawless; John R Pettersson; Gordon S Rule; Frederick Lanni; Sunil Saxena
Journal:  Biophys J       Date:  2018-02-06       Impact factor: 4.033

7.  Structural Studies of Amyloid Fibrils by Paramagnetic Solid-State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Theint Theint; Yongjie Xia; Philippe S Nadaud; Dwaipayan Mukhopadhyay; Charles D Schwieters; Krystyna Surewicz; Witold K Surewicz; Christopher P Jaroniec
Journal:  J Am Chem Soc       Date:  2018-10-09       Impact factor: 15.419

8.  Metal-Chelated Polymer Nanodiscs for NMR Studies.

Authors:  Nathaniel Z Hardin; Vojč Kocman; Giacomo M Di Mauro; Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-17       Impact factor: 15.336

9.  Visualizing conformational dynamics of proteins in solution and at the cell membrane.

Authors:  Sharona E Gordon; Mika Munari; William N Zagotta
Journal:  Elife       Date:  2018-06-20       Impact factor: 8.140

  9 in total

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