Literature DB >> 16366572

Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation.

Nicolas Giraud1, Martin Blackledge, Maurice Goldman, Anja Böckmann, Anne Lesage, François Penin, Lyndon Emsley.   

Abstract

A detailed analysis of nitrogen-15 longitudinal relaxation times in microcrystalline proteins is presented. A theoretical model to quantitatively interpret relaxation times is developed in terms of motional amplitude and characteristic time scale. Different averaging schemes are examined in order to propose an analysis of relaxation curves that takes into account the specificity of MAS experiments. In particular, it is shown that magic angle spinning averages the relaxation rate experienced by a single spin over one rotor period, resulting in individual relaxation curves that are dependent on the orientation of their corresponding carousel with respect to the rotor axis. Powder averaging thus leads to a nonexponential behavior in the observed decay curves. We extract dynamic information from experimental decay curves, using a diffusion in a cone model. We apply this study to the analysis of spin-lattice relaxation rates of the microcrystalline protein Crh at two different fields and determine differential dynamic parameters for several residues in the protein.

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Year:  2005        PMID: 16366572     DOI: 10.1021/ja055182h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  Structure and backbone dynamics of a microcrystalline metalloprotein by solid-state NMR.

Authors:  Michael J Knight; Andrew J Pell; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Roberta Pierattelli; Torsten Herrmann; Lyndon Emsley; Guido Pintacuda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-21       Impact factor: 11.205

Review 2.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

3.  Internal protein dynamics on ps to μs timescales as studied by multi-frequency (15)N solid-state NMR relaxation.

Authors:  Tatiana Zinkevich; Veniamin Chevelkov; Bernd Reif; Kay Saalwächter; Alexey Krushelnitsky
Journal:  J Biomol NMR       Date:  2013-09-19       Impact factor: 2.835

4.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

5.  Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2009-07-24       Impact factor: 2.835

6.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

7.  Motions on the millisecond time scale and multiple conformations of HIV-1 capsid protein: implications for structural polymorphism of CA assemblies.

Authors:  In-Ja L Byeon; Guangjin Hou; Yun Han; Christopher L Suiter; Jinwoo Ahn; Jinwon Jung; Chang-Hyeock Byeon; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2012-04-02       Impact factor: 15.419

8.  Characterization of fibril dynamics on three timescales by solid-state NMR.

Authors:  Albert A Smith; Emilie Testori; Riccardo Cadalbert; Beat H Meier; Matthias Ernst
Journal:  J Biomol NMR       Date:  2016-07-16       Impact factor: 2.835

9.  Conformational Stability and Dynamics in Crystals Recapitulate Protein Behavior in Solution.

Authors:  Benedetta Maria Sala; Tanguy Le Marchand; Guido Pintacuda; Carlo Camilloni; Antonino Natalello; Stefano Ricagno
Journal:  Biophys J       Date:  2020-07-24       Impact factor: 4.033

10.  Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR.

Authors:  Dominique Marion; Diego F Gauto; Isabel Ayala; Karine Giandoreggio-Barranco; Paul Schanda
Journal:  Chemphyschem       Date:  2018-12-20       Impact factor: 3.102

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