Literature DB >> 17226994

Conformational dynamics of substrate in the active site of cytochrome P450 BM-3/NPG complex: insights from NMR order parameters.

Krishna Pratap Ravindranathan1, Emilio Gallicchio, Ann E McDermott, Ronald M Levy.   

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Year:  2007        PMID： 17226994      PMCID： PMC5458413          DOI： 10.1021/ja0672371

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  7 in total

1.  Pivotal role of water in the mechanism of P450BM-3.

Authors:  D C Haines; D R Tomchick; M Machius; J A Peterson
Journal:  Biochemistry       Date:  2001-11-13       Impact factor: 3.162

Review 2.  Molecular dynamics and NMR spin relaxation in proteins.

Authors:  David A Case
Journal:  Acc Chem Res       Date:  2002-06       Impact factor: 22.384

Review 3.  NMR studies of protein structure and dynamics.

Authors:  Lewis E Kay
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

4.  What contributions to protein side-chain dynamics are probed by NMR experiments? A molecular dynamics simulation analysis.

Authors:  Robert B Best; Jane Clarke; Martin Karplus
Journal:  J Mol Biol       Date:  2005-03-16       Impact factor: 5.469

5.  Thermal equilibrium of high- and low-spin forms of cytochrome P450 BM-3: repositioning of the substrate?

Authors:  Tijana Jovanovic; Ramy Farid; Richard A Friesner; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-10-05       Impact factor: 15.419

6.  Conformational equilibrium of cytochrome P450 BM-3 complexed with N-palmitoylglycine: a replica exchange molecular dynamics study.

Authors:  Krishna Pratap Ravindranathan; Emilio Gallicchio; Richard A Friesner; Ann E McDermott; Ronald M Levy
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

Review 7.  Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences.

Authors:  Virginia A Jarymowycz; Martin J Stone
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622
  7 in total
  11 in total

1.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

2.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

Review 3.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

4.  Structural evidence: a single charged residue affects substrate binding in cytochrome P450 BM-3.

Authors:  Jaclyn Catalano; Kianoush Sadre-Bazzaz; Gabriele A Amodeo; Liang Tong; Ann McDermott
Journal:  Biochemistry       Date:  2013-09-16       Impact factor: 3.162

5.  A single active-site mutation of P450BM-3 dramatically enhances substrate binding and rate of product formation.

Authors:  Donovan C Haines; Amita Hegde; Baozhi Chen; Weiqiang Zhao; Muralidhar Bondlela; John M Humphreys; David A Mullin; Diana R Tomchick; Mischa Machius; Julian A Peterson
Journal:  Biochemistry       Date:  2011-09-06       Impact factor: 3.162

6.  The AGBNP2 Implicit Solvation Model.

Authors:  Emilio Gallicchio; Kristina Paris; Ronald M Levy
Journal:  J Chem Theory Comput       Date:  2009-07-31       Impact factor: 6.006

7.  A functional proline switch in cytochrome P450cam.

Authors:  Bo OuYang; Susan Sondej Pochapsky; Marina Dang; Thomas C Pochapsky
Journal:  Structure       Date:  2008-05-29       Impact factor: 5.006

8.  Dynamic Nuclear Polarization Enhanced MAS NMR Spectroscopy for Structural Analysis of HIV-1 Protein Assemblies.

Authors:  Rupal Gupta; Manman Lu; Guangjin Hou; Marc A Caporini; Melanie Rosay; Werner Maas; Jochem Struppe; Christopher Suiter; Jinwoo Ahn; In-Ja L Byeon; W Trent Franks; Marcella Orwick-Rydmark; Andrea Bertarello; Hartmut Oschkinat; Anne Lesage; Guido Pintacuda; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2016-01-12       Impact factor: 2.991

9.  QM/MM Simulation on P450 BM3 Enzyme Catalysis Mechanism.

Authors:  Li Tian; Richard A Friesner
Journal:  J Chem Theory Comput       Date:  2009       Impact factor: 6.006

10.  Four-dimensional heteronuclear correlation experiments for chemical shift assignment of solid proteins.

Authors:  W Trent Franks; Kathryn D Kloepper; Benjamin J Wylie; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2007-08-09       Impact factor: 2.582
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