Literature DB >> 18762869

Measurement of carbonyl chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy: comparison between uniformly and selectively (13)C labeled samples.

Patrik Lundström1, D Flemming Hansen, Lewis E Kay.   

Abstract

Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion nuclear magnetic resonance (NMR) spectroscopy has emerged as a powerful method for quantifying chemical shifts of excited protein states. For many applications of the technique that involve the measurement of relaxation rates of carbon magnetization it is necessary to prepare samples with isolated (13)C spins so that experiments do not suffer from magnetization transfer between coupled carbon spins that would otherwise occur during the CPMG pulse train. In the case of (13)CO experiments however the large separation between (13)CO and (13)C(alpha) chemical shifts offers hope that robust (13)CO dispersion profiles can be recorded on uniformly (13)C labeled samples, leading to the extraction of accurate (13)CO chemical shifts of the invisible, excited state. Here we compare such chemical shifts recorded on samples that are selectively labeled, prepared using [1-(13)C]-pyruvate and NaH(13)CO(3,) or uniformly labeled, generated from (13)C-glucose. Very similar (13)CO chemical shifts are obtained from analysis of CPMG experiments recorded on both samples, and comparison with chemical shifts measured using a second approach establishes that the shifts measured from relaxation dispersion are very accurate.

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Year:  2008        PMID: 18762869     DOI: 10.1007/s10858-008-9260-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  51 in total

1.  NMR spectroscopic characterization of millisecond protein folding by transverse relaxation dispersion measurements.

Authors:  Markus Zeeb; Jochen Balbach
Journal:  J Am Chem Soc       Date:  2005-09-28       Impact factor: 15.419

2.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

3.  The mechanism of rate-limiting motions in enzyme function.

Authors:  Eric D Watt; Hiroko Shimada; Evgenii L Kovrigin; J Patrick Loria
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-05       Impact factor: 11.205

4.  Carbon relaxation in randomly fractionally 13C-enriched proteins.

Authors:  A J Wand; R J Bieber; J L Urbauer; R P McEvoy; Z Gan
Journal:  J Magn Reson B       Date:  1995-08

5.  Improved labeling strategy for 13C relaxation measurements of methyl groups in proteins.

Authors:  A L Lee; J L Urbauer; A J Wand
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Homology of a yeast actin-binding protein to signal transduction proteins and myosin-I.

Authors:  D G Drubin; J Mulholland; Z M Zhu; D Botstein
Journal:  Nature       Date:  1990-01-18       Impact factor: 49.962

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Probing chemical shifts of invisible states of proteins with relaxation dispersion NMR spectroscopy: how well can we do?

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Patrik Lundström; Philipp Neudecker; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2008-02-01       Impact factor: 15.419

10.  Carbonyl carbon transverse relaxation dispersion measurements and ms-micros timescale motion in a protein hydrogen bond network.

Authors:  Rieko Ishima; James Baber; John M Louis; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

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  34 in total

1.  Protein conformational exchange measured by 1H R1ρ relaxation dispersion of methyl groups.

Authors:  Ulrich Weininger; Annica T Blissing; Janosch Hennig; Alexandra Ahlner; Zhihong Liu; Hans J Vogel; Mikael Akke; Patrik Lundström
Journal:  J Biomol NMR       Date:  2013-08-02       Impact factor: 2.835

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

3.  Measurement of signs of chemical shift differences between ground and excited protein states: a comparison between H(S/M)QC and R1rho methods.

Authors:  Renate Auer; D Flemming Hansen; Philipp Neudecker; Dmitry M Korzhnev; D Ranjith Muhandiram; Robert Konrat; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-12-22       Impact factor: 2.835

4.  Isotope labeling methods for studies of excited protein states by relaxation dispersion NMR spectroscopy.

Authors:  Patrik Lundström; Pramodh Vallurupalli; D Flemming Hansen; Lewis E Kay
Journal:  Nat Protoc       Date:  2009-10-22       Impact factor: 13.491

5.  Quantifying millisecond time-scale exchange in proteins by CPMG relaxation dispersion NMR spectroscopy of side-chain carbonyl groups.

Authors:  Alexandar L Hansen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2011-06-18       Impact factor: 2.835

6.  Measurement of protein unfolding/refolding kinetics and structural characterization of hidden intermediates by NMR relaxation dispersion.

Authors:  Derrick W Meinhold; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-11       Impact factor: 11.205

Review 7.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

8.  Measuring 13Cbeta chemical shifts of invisible excited states in proteins by relaxation dispersion NMR spectroscopy.

Authors:  Patrik Lundström; Hong Lin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-05-16       Impact factor: 2.835

9.  (13)C-NMR studies on disulfide bond isomerization in bovine pancreatic trypsin inhibitor (BPTI).

Authors:  Mitsuhiro Takeda; Yohei Miyanoiri; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-08-26       Impact factor: 2.835

10.  Probing microsecond time scale dynamics in proteins by methyl (1)H Carr-Purcell-Meiboom-Gill relaxation dispersion NMR measurements. Application to activation of the signaling protein NtrC(r).

Authors:  Renee Otten; Janice Villali; Dorothee Kern; Frans A A Mulder
Journal:  J Am Chem Soc       Date:  2010-11-08       Impact factor: 15.419

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