Literature DB >> 9255947

Improved labeling strategy for 13C relaxation measurements of methyl groups in proteins.

A L Lee1, J L Urbauer, A J Wand.   

Abstract

Selective incorporation of 13C into the methyl groups of protein side chains is described as a means for simplifying the measurement and interpretation of 13C relaxation parameters. High incorporation (> 90%) is accomplished by using pyruvate (3-13C, 99%) as the sole carbon source in the growth media for protein overexpression in E. coli. This improved labeling scheme increases the sensitivity of the relaxation experiments by approximately fivefold when compared to randomly fractionally 13C-labeled protein, allowing high-quality measurements on relatively dilute (< 1 mM) protein samples at a relatively low cost.

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Year:  1997        PMID: 9255947     DOI: 10.1023/a:1018311013338

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  7 in total

1.  Carbon relaxation in randomly fractionally 13C-enriched proteins.

Authors:  A J Wand; R J Bieber; J L Urbauer; R P McEvoy; Z Gan
Journal:  J Magn Reson B       Date:  1995-08

2.  Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding.

Authors:  D Yang; L E Kay
Journal:  J Mol Biol       Date:  1996-10-25       Impact factor: 5.469

3.  Insights into the local residual entropy of proteins provided by NMR relaxation.

Authors:  Z Li; S Raychaudhuri; A J Wand
Journal:  Protein Sci       Date:  1996-12       Impact factor: 6.725

4.  Carbon-13 nuclear magnetic resonance relaxation studies of internal mobility of the polypeptide chain in basic pancreatic trypsin inhibitor and a selectively reduced analogue.

Authors:  R Richarz; K Nagayama; K Wüthrich
Journal:  Biochemistry       Date:  1980-11-11       Impact factor: 3.162

5.  Selective methyl group protonation of perdeuterated proteins.

Authors:  M K Rosen; K H Gardner; R C Willis; W E Parris; T Pawson; L E Kay
Journal:  J Mol Biol       Date:  1996-11-15       Impact factor: 5.469

6.  Dynamics of methyl groups in proteins as studied by proton-detected 13C NMR spectroscopy. Application to the leucine residues of staphylococcal nuclease.

Authors:  L K Nicholson; L E Kay; D M Baldisseri; J Arango; P E Young; A Bax; D A Torchia
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

7.  Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein.

Authors:  A J Wand; J L Urbauer; R P McEvoy; R J Bieber
Journal:  Biochemistry       Date:  1996-05-14       Impact factor: 3.162

  7 in total
  24 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  Optimized labeling of 13CHD2 methyl isotopomers in perdeuterated proteins: potential advantages for 13C relaxation studies of methyl dynamics of larger proteins.

Authors:  R Ishima; J M Louis; D A Torchia
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

3.  Comparison of (13)C(alpha)H and (15)NH backbone dynamics in protein GB1.

Authors:  Djaudat Idiyatullin; Irina Nesmelova; Vladimir A Daragan; Kevin H Mayo
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

4.  Applications of NMR spin relaxation methods for measuring biological motions.

Authors:  Guruvasuthevan R Thuduppathy; R Blake Hill
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

Review 5.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

6.  NMR studies of the dynamics of nitrophorin 2 bound to nitric oxide.

Authors:  Dhanasekaran Muthu; Robert E Berry; Hongjun Zhang; F Ann Walker
Journal:  Biochemistry       Date:  2013-10-30       Impact factor: 3.162

7.  Measurement of methyl 13C-1H cross-correlation in uniformly 13C-, 15N-, labeled proteins.

Authors:  Weidong Liu; Yu Zheng; David P Cistola; Daiwen Yang
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

8.  Probing microsecond time scale dynamics in proteins by methyl (1)H Carr-Purcell-Meiboom-Gill relaxation dispersion NMR measurements. Application to activation of the signaling protein NtrC(r).

Authors:  Renee Otten; Janice Villali; Dorothee Kern; Frans A A Mulder
Journal:  J Am Chem Soc       Date:  2010-11-08       Impact factor: 15.419

Review 9.  A surprising role for conformational entropy in protein function.

Authors:  A Joshua Wand; Veronica R Moorman; Kyle W Harpole
Journal:  Top Curr Chem       Date:  2013

10.  Measurement of carbonyl chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy: comparison between uniformly and selectively (13)C labeled samples.

Authors:  Patrik Lundström; D Flemming Hansen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

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