Literature DB >> 16492013

Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements.

Kaare Teilum1, Ulrika Brath, Patrik Lundström, Mikael Akke.   

Abstract

Site-specific 13C labeling offers a desirable means of eliminating unwanted relaxation pathways and coherent magnetization transfer in NMR relaxation experiments. Here we use [1-13C]-glucose as the sole carbon source in the growth media for protein overexpression in Escherichia coli. The approach results in specific incorporation of 13C at isolated positions in the side chains of aromatic amino acids, which greatly simplifies the measurements and interpretation of 13C relaxation rates in these spin systems. The method is well suited for characterization of chemical exchange by CPMG or spin-lock relaxation methods. We validated the method by acquiring 13C rotating-frame relaxation dispersion data on the E140Q mutant of the C-terminal domain of calmodulin, which reveal conformational exchange dynamics with a time constant of 71 mus for Y138.

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Year:  2006        PMID: 16492013     DOI: 10.1021/ja055660o

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  38 in total

Review 1.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

2.  Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states.

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-06-24       Impact factor: 2.835

3.  Monitoring aromatic picosecond to nanosecond dynamics in proteins via 13C relaxation: expanding perturbation mapping of the rigidifying core mutation, V54A, in eglin c.

Authors:  Joshua A Boyer; Andrew L Lee
Journal:  Biochemistry       Date:  2008-04-05       Impact factor: 3.162

Review 4.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

5.  Alternative SAIL-Trp for robust aromatic signal assignment and determination of the χ(2) conformation by intra-residue NOEs.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; JunGoo Jee; Akira M Ono; Kosuke Okuma; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2011-09-23       Impact factor: 2.835

6.  Entropy drives selective fluorine recognition in the fluoroacetyl-CoA thioesterase from Streptomyces cattleya.

Authors:  Amy M Weeks; Ningkun Wang; Jeffrey G Pelton; Michelle C Y Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-16       Impact factor: 11.205

7.  Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 kDa Enzyme by Specific 1H-13C Labeling and Fast Magic-Angle Spinning NMR.

Authors:  Diego F Gauto; Pavel Macek; Alessandro Barducci; Hugo Fraga; Audrey Hessel; Tsutomu Terauchi; David Gajan; Yohei Miyanoiri; Jerome Boisbouvier; Roman Lichtenecker; Masatsune Kainosho; Paul Schanda
Journal:  J Am Chem Soc       Date:  2019-07-05       Impact factor: 15.419

8.  Measurement of carbonyl chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy: comparison between uniformly and selectively (13)C labeled samples.

Authors:  Patrik Lundström; D Flemming Hansen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

9.  Structural characterization of supramolecular assemblies by ¹³C spin dilution and 3D solid-state NMR.

Authors:  Birgit Habenstein; Antoine Loquet; Karin Giller; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2012-12-01       Impact factor: 2.835

10.  Histidine side-chain dynamics and protonation monitored by 13C CPMG NMR relaxation dispersion.

Authors:  Mathias A S Hass; Ali Yilmaz; Hans E M Christensen; Jens J Led
Journal:  J Biomol NMR       Date:  2009-06-17       Impact factor: 2.835

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