Literature DB >> 19781966

Labeling strategies for 13C-detected aligned-sample solid-state NMR of proteins.

Fabian V Filipp1, Neeraj Sinha, Lena Jairam, Joel Bradley, Stanley J Opella.   

Abstract

(13)C-detected solid-state NMR experiments have substantially higher sensitivity than the corresponding (15)N-detected experiments on stationary, aligned samples of isotopically labeled proteins. Several methods for tailoring the isotopic labeling are described that result in spatially isolated (13)C sites so that dipole-dipole couplings among the (13)C are minimized, thus eliminating the need for homonuclear (13)C-(13)C decoupling in either indirect or direct dimensions of one- or multi-dimensional NMR experiments that employ (13)C detection. The optimal percentage for random fractional (13)C labeling is between 25% and 35%. Specifically labeled glycerol and glucose can be used at the carbon sources to tailor the isotopic labeling, and the choice depends on the resonances of interest for a particular study. For investigations of the protein backbone, growth of the bacteria on [2-(13)C]-glucose-containing media was found to be most effective.

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Year:  2009        PMID: 19781966      PMCID: PMC2804798          DOI: 10.1016/j.jmr.2009.08.012

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  18 in total

1.  Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy.

Authors:  Federica Castellani; Barth van Rossum; Annette Diehl; Mario Schubert; Kristina Rehbein; Hartmut Oschkinat
Journal:  Nature       Date:  2002-11-07       Impact factor: 49.962

Review 2.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

Review 3.  Peptides and the development of double- and triple-resonance solid-state NMR of aligned samples.

Authors:  N Sinha; C V Grant; K S Rotondi; L Feduik-Rotondi; L M Gierasch; S J Opella
Journal:  J Pept Res       Date:  2005-06

Review 4.  Multidimensional solid state NMR of anisotropic interactions in peptides and proteins.

Authors:  Benjamin J Wylie; Chad M Rienstra
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

5.  Filamentous phage studied by magic-angle spinning NMR: resonance assignment and secondary structure of the coat protein in Pf1.

Authors:  Amir Goldbourt; Benjamin J Gross; Loren A Day; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2007-02-06       Impact factor: 15.419

6.  Tailoring 13C labeling for triple-resonance solid-state NMR experiments on aligned samples of proteins.

Authors:  Neeraj Sinha; Fabian V Filipp; Lena Jairam; Sang Ho Park; Joel Bradley; Stanley J Opella
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

7.  Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy.

Authors:  David S Thiriot; Alexander A Nevzorov; Lena Zagyanskiy; Chin H Wu; Stanley J Opella
Journal:  J Mol Biol       Date:  2004-08-13       Impact factor: 5.469

8.  Assignment of congested NMR spectra: carbonyl backbone enrichment via the Entner-Doudoroff pathway.

Authors:  Amir Goldbourt; Loren A Day; Ann E McDermott
Journal:  J Magn Reson       Date:  2007-08-17       Impact factor: 2.229

9.  Selective backbone labeling of proteins using 1,2-13C2-pyruvate as carbon source.

Authors:  Chenyun Guo; Chun Geng; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-05-26       Impact factor: 2.835

10.  Fractional 13C enrichment of isolated carbons using [1-13C]- or [2- 13C]-glucose facilitates the accurate measurement of dynamics at backbone Calpha and side-chain methyl positions in proteins.

Authors:  Patrik Lundström; Kaare Teilum; Tommy Carstensen; Irina Bezsonova; Silke Wiesner; D Flemming Hansen; Tomasz L Religa; Mikael Akke; Lewis E Kay
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.582

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  6 in total

Review 1.  Structure determination of membrane proteins in five easy pieces.

Authors:  Francesca M Marassi; Bibhuti B Das; George J Lu; Henry J Nothnagel; Sang Ho Park; Woo Sung Son; Ye Tian; Stanley J Opella
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

2.  Structure determination of a membrane protein in proteoliposomes.

Authors:  Bibhuti B Das; Henry J Nothnagel; George J Lu; Woo Sung Son; Ye Tian; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2012-01-23       Impact factor: 15.419

3.  A general assignment method for oriented sample (OS) solid-state NMR of proteins based on the correlation of resonances through heteronuclear dipolar couplings in samples aligned parallel and perpendicular to the magnetic field.

Authors:  George J Lu; Woo Sung Son; Stanley J Opella
Journal:  J Magn Reson       Date:  2011-01-21       Impact factor: 2.229

4.  Experiments optimized for magic angle spinning and oriented sample solid-state NMR of proteins.

Authors:  Bibhuti B Das; Eugene C Lin; Stanley J Opella
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

5.  (1)H-(13)C Hetero-nuclear dipole-dipole couplings of methyl groups in stationary and magic angle spinning solid-state NMR experiments of peptides and proteins.

Authors:  Chin H Wu; Bibhuti B Das; Stanley J Opella
Journal:  J Magn Reson       Date:  2009-10-21       Impact factor: 2.229

6.  Evaluation of integrin αvβ6 cystine knot PET tracers to detect cancer and idiopathic pulmonary fibrosis.

Authors:  Richard H Kimura; Ling Wang; Bin Shen; Li Huo; Willemieke Tummers; Fabian V Filipp; Haiwei Henry Guo; Thomas Haywood; Lotfi Abou-Elkacem; Lucia Baratto; Frezghi Habte; Rammohan Devulapally; Timothy H Witney; Yan Cheng; Suhas Tikole; Subhendu Chakraborti; Jay Nix; Christopher A Bonagura; Negin Hatami; Joshua J Mooney; Tushar Desai; Scott Turner; Richard S Gaster; Andrea Otte; Brendan C Visser; George A Poultsides; Jeffrey Norton; Walter Park; Mark Stolowitz; Kenneth Lau; Eric Yang; Arutselvan Natarajan; Ohad Ilovich; Shyam Srinivas; Ananth Srinivasan; Ramasamy Paulmurugan; Juergen Willmann; Frederick T Chin; Zhen Cheng; Andrei Iagaru; Fang Li; Sanjiv S Gambhir
Journal:  Nat Commun       Date:  2019-10-14       Impact factor: 14.919

  6 in total

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