Literature DB >> 19397253

Comprehensive analysis of lipid dynamics variation with lipid composition and hydration of bicelles using nuclear magnetic resonance (NMR) spectroscopy.

Kazutoshi Yamamoto1, Ronald Soong, Ayyalusamy Ramamoorthy.   

Abstract

Bicelles of various lipid/detergent ratios are commonly used in nuclear magnetic resonance (NMR) studies of membrane-associated molecules without the need to freeze the sample. While a decrease in the size (defined at a low temperature or by the q value) of a bicelle decreases its overall order parameter, the variation of lipid dynamics with a change in the lipid/detergent ratio is unknown. In this study, we report a thorough atomistic level analysis on the variation of lipid dynamics with the size and hydration level of bicelles composed of a phospholipid, 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC), and a detergent, 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC). Two-dimensional (2D) separated-local-field NMR experiments were performed on magnetically aligned bicelles to measure (1)H-(13)C dipolar couplings, which were used to determine order parameters at various (head-group, glycerol, and acyl chain) regions of lipids in the bilayer. From our analysis, we uncover the extreme sensitivity of the glycerol region to the motion of the bicelle, which can be attributed to the effect of viscosity because of an extensive network of hydrogen bonds. As such, the water-membrane interface region exhibits the highest order parameter values among all three regions of a lipid molecule. Our experimental results demonstrate that the laboratory-frame 2D proton-detected-local-field pulse sequence is well-suited for the accurate measurement of motionally averaged (or long-range) weak and multiple (1)H-(13)C dipolar couplings associated with a single carbon site at the natural abundance of (13)C nuclei.

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Year:  2009        PMID: 19397253      PMCID: PMC2794801          DOI: 10.1021/la900200s

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  41 in total

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Authors:  Akihiro Kusumi; Chieko Nakada; Ken Ritchie; Kotono Murase; Kenichi Suzuki; Hideji Murakoshi; Rinshi S Kasai; Junko Kondo; Takahiro Fujiwara
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

2.  Sensitivity and resolution enhancement in solid-state NMR spectroscopy of bicelles.

Authors:  Sergey V Dvinskikh; Kazutoshi Yamamoto; Ulrich H N Dürr; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2006-11-02       Impact factor: 2.229

3.  Orientation and flexibility of the choline head group in phosphatidylcholine bilayers.

Authors:  J Seelig; G U Gally; R Wohlgemuth
Journal:  Biochim Biophys Acta       Date:  1977-06-02

4.  SANS study on the effect of lanthanide ions and charged lipids on the morphology of phospholipid mixtures. Small-angle neutron scattering.

Authors:  Mu-Ping Nieh; Charles J Glinka; Susan Krueger; R Scott Prosser; John Katsaras
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

5.  Magnetically aligned phospholipid bilayers with large q ratios stabilize magnetic alignment with high order in the gel and L(alpha) phases.

Authors:  Thomas B Cardon; Paresh C Dave; Gary A Lorigan
Journal:  Langmuir       Date:  2005-05-10       Impact factor: 3.882

6.  Freezing point depression of water in phospholipid membranes: a solid-state NMR study.

Authors:  Dong-Kuk Lee; Byung Soo Kwon; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2008-12-02       Impact factor: 3.882

7.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

8.  Diffusion of PEG confined between lamellae of negatively magnetically aligned bicelles: pulsed field gradient 1H NMR measurements.

Authors:  Ronald Soong; Peter M Macdonald
Journal:  Langmuir       Date:  2007-12-21       Impact factor: 3.882

9.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

10.  Determining the effects of lipophilic drugs on membrane structure by solid-state NMR spectroscopy: the case of the antioxidant curcumin.

Authors:  Jeffrey Barry; Michelle Fritz; Jeffrey R Brender; Pieter E S Smith; Dong-Kuk Lee; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

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  14 in total

1.  Fast NMR data acquisition from bicelles containing a membrane-associated peptide at natural-abundance.

Authors:  Kazutoshi Yamamoto; Subramanian Vivekanandan; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2011-10-11       Impact factor: 2.991

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

3.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

4.  Use of a copper-chelated lipid speeds up NMR measurements from membrane proteins.

Authors:  Kazutoshi Yamamoto; Jiadi Xu; Karen E Kawulka; John C Vederas; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-05-26       Impact factor: 15.419

5.  Solid-state NMR reveals the hydrophobic-core location of poly(amidoamine) dendrimers in biomembranes.

Authors:  Pieter E S Smith; Jeffrey R Brender; Ulrich H N Dürr; Jiadi Xu; Douglas G Mullen; Mark M Banaszak Holl; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-06-16       Impact factor: 15.419

6.  Probing Residue-Specific Water-Protein Interactions in Oriented Lipid Membranes via Solid-State NMR Spectroscopy.

Authors:  Alysha Dicke; T Gopinath; Yingjie Wang; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2016-10-18       Impact factor: 2.991

7.  A proton spin diffusion based solid-state NMR approach for structural studies on aligned samples.

Authors:  Jiadi Xu; Pieter E S Smith; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2011-04-05       Impact factor: 2.991

8.  Membrane disordering is not sufficient for membrane permeabilization by islet amyloid polypeptide: studies of IAPP(20-29) fragments.

Authors:  Jeffrey R Brender; Deborah L Heyl; Shyamprasad Samisetti; Samuel A Kotler; Joshua M Osborne; Ranadheer R Pesaru; Ayyalusamy Ramamoorthy
Journal:  Phys Chem Chem Phys       Date:  2013-03-15       Impact factor: 3.676

9.  Anesthetic effects on the structure and dynamics of the second transmembrane domains of nAChR alpha4beta2.

Authors:  Tanxing Cui; Christian G Canlas; Yan Xu; Pei Tang
Journal:  Biochim Biophys Acta       Date:  2009-08-26

Review 10.  When detergent meets bilayer: birth and coming of age of lipid bicelles.

Authors:  Ulrich H N Dürr; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-01-23       Impact factor: 9.795

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