Literature DB >> 21466219

A proton spin diffusion based solid-state NMR approach for structural studies on aligned samples.

Jiadi Xu1, Pieter E S Smith, Ronald Soong, Ayyalusamy Ramamoorthy.   

Abstract

Rapidly expanding research on nonsoluble and noncrystalline chemical and biological materials necessitates sophisticated techniques to image these materials at atomic-level resolution. Although their study poses a formidable challenge, solid-state NMR is a powerful tool that has demonstrated application to the investigation of their molecular architecture and functioning. In particular, 2D separated-local-field (SLF) spectroscopy is increasingly applied to obtain high-resolution molecular images of these materials. However, despite the common use of SLF experiments in the structural studies of a variety of aligned molecules, the lack of a resonance assignment approach has been a major disadvantage. As a result, solid-state NMR studies have mostly been limited to aligned systems that are labeled with an isotope at a single site. Here, we demonstrate an approach for resonance assignment through a controlled reintroduction of proton spin diffusion in the 2D proton-evolved-local-field (PELF) pulse sequence. Experimental results and simulations suggest that the use of spin diffusion also enables the measurement of long-range heteronuclear dipolar couplings that can be used as additional constraints in the structural and dynamical studies of aligned molecules. The new method is used to determine the de novo atomic-level resolution structure of a liquid crystalline material, N-(4-methoxybenzylidene)-4-butylaniline, and its use on magnetically aligned bicelles is also demonstrated. We expect this technique to also be valuable in the structural studies of functional molecules like columnar liquid crystals and other biomaterials.

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Year:  2011        PMID: 21466219      PMCID: PMC3085961          DOI: 10.1021/jp201501q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  50 in total

1.  Structure determination of aligned samples of membrane proteins by NMR spectroscopy.

Authors:  Alexander A Nevzorov; Michael F Mesleh; Stanley J Opella
Journal:  Magn Reson Chem       Date:  2004-02       Impact factor: 2.447

2.  Isotropic-liquid crystalline phase diagram of a CdSe nanorod solution.

Authors:  Liang-Shi Li; Malgorzata Marjanska; Gregory H J Park; Alexander Pines; A Paul Alivisatos
Journal:  J Chem Phys       Date:  2004-01-15       Impact factor: 3.488

3.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

4.  Characterization of the structure and membrane interaction of the antimicrobial peptides aurein 2.2 and 2.3 from Australian southern bell frogs.

Authors:  Yeang-Ling Pan; John T-J Cheng; John Hale; Jinhe Pan; Robert E W Hancock; Suzana K Straus
Journal:  Biophys J       Date:  2007-01-26       Impact factor: 4.033

Review 5.  Structure elucidation of membrane-associated peptides and proteins in oriented bilayers by solid-state NMR spectroscopy.

Authors:  Akira Naito
Journal:  Solid State Nucl Magn Reson       Date:  2009-07-08       Impact factor: 2.293

6.  2(n)-SEMA-a robust solid state nuclear magnetic resonance experiment for measuring heteronuclear dipolar couplings in static oriented systems using effective transverse spin-lock.

Authors:  S Jayanthi; K V Ramanathan
Journal:  J Chem Phys       Date:  2010-04-07       Impact factor: 3.488

Review 7.  What can solid state NMR contribute to our understanding of protein folding?

Authors:  Kan-Nian Hu; Robert Tycko
Journal:  Biophys Chem       Date:  2010-05-23       Impact factor: 2.352

8.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

9.  Solid-state NMR studies of HIV-1 capsid protein assemblies.

Authors:  Yun Han; Jinwoo Ahn; Jason Concel; In-Ja L Byeon; Angela M Gronenborn; Jun Yang; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

10.  Determining the effects of lipophilic drugs on membrane structure by solid-state NMR spectroscopy: the case of the antioxidant curcumin.

Authors:  Jeffrey Barry; Michelle Fritz; Jeffrey R Brender; Pieter E S Smith; Dong-Kuk Lee; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

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  7 in total

1.  Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Authors:  Kaustubh R Mote; T Gopinath; Nathaniel J Traaseth; Jason Kitchen; Peter L Gor'kov; William W Brey; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2011-11       Impact factor: 2.835

2.  Analysis of a nanocrystalline polymer dispersion of ebselen using solid-state NMR, Raman microscopy, and powder X-ray diffraction.

Authors:  Frederick G Vogt; Glenn R Williams
Journal:  Pharm Res       Date:  2012-02-25       Impact factor: 4.200

3.  A spectroscopic assignment technique for membrane proteins reconstituted in magnetically aligned bicelles.

Authors:  Wenxing Tang; Robert W Knox; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2012-09-14       Impact factor: 2.835

4.  Polymer nanodiscs and macro-nanodiscs of a varying lipid composition.

Authors:  Venkata Sudheer Kumar Ramadugu; Giacomo Maria Di Mauro; Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2017-09-28       Impact factor: 6.222

Review 5.  When detergent meets bilayer: birth and coming of age of lipid bicelles.

Authors:  Ulrich H N Dürr; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-01-23       Impact factor: 9.795

6.  Membrane protein structure determination: back to the membrane.

Authors:  Yong Yao; Yi Ding; Ye Tian; Stanley J Opella; Francesca M Marassi
Journal:  Methods Mol Biol       Date:  2013

Review 7.  The magic of bicelles lights up membrane protein structure.

Authors:  Ulrich H N Dürr; Melissa Gildenberg; Ayyalusamy Ramamoorthy
Journal:  Chem Rev       Date:  2012-08-24       Impact factor: 60.622

  7 in total

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