Literature DB >> 20433169

Use of a copper-chelated lipid speeds up NMR measurements from membrane proteins.

Kazutoshi Yamamoto1, Jiadi Xu, Karen E Kawulka, John C Vederas, Ayyalusamy Ramamoorthy.   

Abstract

Recent studies have demonstrated the abilities of solid-state NMR techniques to solve atomic-level-resolution structures and dynamics of membrane-associated proteins and peptides. However, high-throughput applications of solid-state NMR spectroscopy are hampered by long acquisition times due to the low sensitivity of the technique. In this study, we demonstrate the use of a paramagnetic copper-chelated lipid to enhance the spin-lattice relaxation and thereby speed up solid-state NMR measurements. Fluid lamellar-phase bicelles composed of a lipid, detergent, and the copper-chelated lipid and containing a uniformly (15)N-labeled antimicrobial peptide, subtilosin A, were used at room temperature. The use of a chelating lipid reduces the concentration of free copper and limits RF-induced heating, a major problem for fluid samples. Our results demonstrate a 6.2-fold speed increase and a 2.7-fold improvement in signal-to-noise ratio for solid-state NMR experiments under magic-angle spinning and static conditions, respectively. Furthermore, solid-state NMR measurements are shown to be feasible even for nanomole concentrations of a membrane-associated peptide.

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Year:  2010        PMID: 20433169      PMCID: PMC2874097          DOI: 10.1021/ja102103n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

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Review 4.  Current applications of bicelles in NMR studies of membrane-associated amphiphiles and proteins.

Authors:  R Scott Prosser; Ferenc Evanics; Julianne L Kitevski; M Sameer Al-Abdul-Wahid
Journal:  Biochemistry       Date:  2006-07-18       Impact factor: 3.162

5.  Membrane permeabilization, orientation, and antimicrobial mechanism of subtilosin A.

Authors:  Sathiah Thennarasu; Dong-Kuk Lee; Alan Poon; Karen E Kawulka; John C Vederas; Ayyalusamy Ramamoorthy
Journal:  Chem Phys Lipids       Date:  2005-10       Impact factor: 3.329

6.  Enhanced sensitivity and resolution in (1)H solid-state NMR spectroscopy of paramagnetic complexes under very fast magic angle spinning.

Authors:  Nalinda P Wickramasinghe; Medhat Shaibat; Yoshitaka Ishii
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

7.  Reduction of RF-induced sample heating with a scroll coil resonator structure for solid-state NMR probes.

Authors:  John A Stringer; Charles E Bronnimann; Charles G Mullen; Donghua H Zhou; Sara A Stellfox; Ying Li; Evan H Williams; Chad M Rienstra
Journal:  J Magn Reson       Date:  2005-03       Impact factor: 2.229

8.  Determining the topology of integral membrane peptides using EPR spectroscopy.

Authors:  Johnson J Inbaraj; Thomas B Cardon; Mikhail Laryukhin; Stuart M Grosser; Gary A Lorigan
Journal:  J Am Chem Soc       Date:  2006-07-26       Impact factor: 15.419

9.  Presentation of membrane-anchored glycosphingolipids determined from molecular dynamics simulations and NMR paramagnetic relaxation rate enhancement.

Authors:  Mari L Demarco; Robert J Woods; James H Prestegard; Fang Tian
Journal:  J Am Chem Soc       Date:  2010-02-03       Impact factor: 15.419

10.  Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine.

Authors:  Karen Kawulka; Tara Sprules; Ryan T McKay; Pascal Mercier; Christopher M Diaper; Peter Zuber; John C Vederas
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

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  30 in total

1.  Fast NMR data acquisition from bicelles containing a membrane-associated peptide at natural-abundance.

Authors:  Kazutoshi Yamamoto; Subramanian Vivekanandan; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2011-10-11       Impact factor: 2.991

2.  Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

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6.  Perspectives for sensitivity enhancement in proton-detected solid-state NMR of highly deuterated proteins by preserving water magnetization.

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7.  Sensitivity enhancement for membrane proteins reconstituted in parallel and perpendicular oriented bicelles obtained by using repetitive cross-polarization and membrane-incorporated free radicals.

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8.  Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

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9.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

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10.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

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Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

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