Literature DB >> 21939237

Fast NMR data acquisition from bicelles containing a membrane-associated peptide at natural-abundance.

Kazutoshi Yamamoto1, Subramanian Vivekanandan, Ayyalusamy Ramamoorthy.   

Abstract

In spite of recent technological advances in NMR spectroscopy, its low sensitivity continues to be a major limitation particularly for the structural studies of membrane proteins. The need for a large quantity of a membrane protein and acquisition of NMR data for a long duration are not desirable. Therefore, there is considerable interest in the development of methods to speed up the NMR data acquisition from model membrane samples. In this study, we demonstrate the feasibility of acquiring two-dimensional spectra of an antimicrobial peptide (MSI-78; also known as pexiganan) embedded in isotropic bicelles using natural-abundance (15)N nuclei. A copper-chelated lipid embedded in bicelles is used to speed-up the spin-lattice relaxation of protons without affecting the spectral resolution and thus enabling fast data acquisition. Our results suggest that even a 2D SOFAST-HMQC spectrum can be obtained four times faster using a very small amount (∼3 mM) of a copper-chelated lipid. These results demonstrate that this approach will be useful in the structural studies of membrane-associated peptides and proteins without the need for isotopic enrichment for solution NMR studies.

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Year:  2011        PMID: 21939237      PMCID: PMC3203308          DOI: 10.1021/jp2076098

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  48 in total

1.  A novel strategy for the assignment of side-chain resonances in completely deuterated large proteins using 13C spectroscopy.

Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  Solid-state NMR spectroscopy of oriented membrane polypeptides at 100 K with signal enhancement by dynamic nuclear polarization.

Authors:  Evgeniy Salnikov; Melanie Rosay; Shane Pawsey; Olivier Ouari; Paul Tordo; Burkhard Bechinger
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

3.  Rapid acquisition of multidimensional solid-state NMR spectra of proteins facilitated by covalently bound paramagnetic tags.

Authors:  Philippe S Nadaud; Jonathan J Helmus; Ishita Sengupta; Christopher P Jaroniec
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

4.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

5.  Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy.

Authors:  Anna A De Angelis; Stanley C Howell; Alexander A Nevzorov; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

6.  Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching.

Authors:  Marcelo J Berardi; William M Shih; Stephen C Harrison; James J Chou
Journal:  Nature       Date:  2011-07-24       Impact factor: 49.962

7.  MSI-78, an analogue of the magainin antimicrobial peptides, disrupts lipid bilayer structure via positive curvature strain.

Authors:  Kevin J Hallock; Dong-Kuk Lee; A Ramamoorthy
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

8.  Determining the topology of integral membrane peptides using EPR spectroscopy.

Authors:  Johnson J Inbaraj; Thomas B Cardon; Mikhail Laryukhin; Stuart M Grosser; Gary A Lorigan
Journal:  J Am Chem Soc       Date:  2006-07-26       Impact factor: 15.419

Review 9.  Structure and function of G protein-coupled receptors using NMR spectroscopy.

Authors:  Joseph A Goncalves; Shivani Ahuja; Sina Erfani; Markus Eilers; Steven O Smith
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-12       Impact factor: 9.795

Review 10.  The cytochromes P450 and b5 and their reductases--promising targets for structural studies by advanced solid-state NMR spectroscopy.

Authors:  Ulrich H N Dürr; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2007-08-24
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  14 in total

1.  Paramagnetic relaxation enhancement for protein-observed 19F NMR as an enabling approach for efficient fragment screening.

Authors:  Laura M L Hawk; Clifford T Gee; Andrew K Urick; Haitao Hu; William C K Pomerantz
Journal:  RSC Adv       Date:  2016-09-29       Impact factor: 3.361

Review 2.  Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies.

Authors:  Vojč Kocman; Giacomo M Di Mauro; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2019-07-12       Impact factor: 2.293

3.  Does cholesterol suppress the antimicrobial peptide induced disruption of lipid raft containing membranes?

Authors:  Austin J McHenry; Michele F M Sciacca; Jeffrey R Brender; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2012-08-01

4.  Cellular solid-state NMR investigation of a membrane protein using dynamic nuclear polarization.

Authors:  Kazutoshi Yamamoto; Marc A Caporini; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2014-07-11

Review 5.  When detergent meets bilayer: birth and coming of age of lipid bicelles.

Authors:  Ulrich H N Dürr; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-01-23       Impact factor: 9.795

6.  Acceleration of natural-abundance solid-state MAS NMR measurements on bone by paramagnetic relaxation from gadolinium-DTPA.

Authors:  Kamal H Mroue; Rongchun Zhang; Peizhi Zhu; Erin McNerny; David H Kohn; Michael D Morris; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-05-10       Impact factor: 2.229

7.  Paramagnetic doping of a 7TM membrane protein in lipid bilayers by Gd³⁺-complexes for solid-state NMR spectroscopy.

Authors:  Sandra J Ullrich; Soraya Hölper; Clemens Glaubitz
Journal:  J Biomol NMR       Date:  2013-12-04       Impact factor: 2.835

8.  High-resolution structural insights into bone: a solid-state NMR relaxation study utilizing paramagnetic doping.

Authors:  Kamal H Mroue; Neil MacKinnon; Jiadi Xu; Peizhi Zhu; Erin McNerny; David H Kohn; Michael D Morris; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-09-19       Impact factor: 2.991

9.  Metal-Chelated Polymer Nanodiscs for NMR Studies.

Authors:  Nathaniel Z Hardin; Vojč Kocman; Giacomo M Di Mauro; Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-17       Impact factor: 15.336

10.  Shortening spin-lattice relaxation using a copper-chelated lipid at low-temperatures - A magic angle spinning solid-state NMR study on a membrane-bound protein.

Authors:  Kazutoshi Yamamoto; Marc A Caporini; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2013-11-01       Impact factor: 2.229

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