Literature DB >> 19324963

Distinct functions of elongation factor G in ribosome recycling and translocation.

Andreas Savelsbergh1, Marina V Rodnina, Wolfgang Wintermeyer.   

Abstract

Elongation factor G (EF-G) promotes the translocation step in bacterial protein synthesis and, together with ribosome recycling factor (RRF), the disassembly of the post-termination ribosome. Unlike translocation, ribosome disassembly strictly requires GTP hydrolysis by EF-G. Here we report that ribosome disassembly is strongly inhibited by vanadate, an analog of inorganic phosphate (Pi), indicating that Pi release is required for ribosome disassembly. In contrast, the function of EF-G in single-round translocation is not affected by vanadate, while the turnover reaction is strongly inhibited. We also show that the antibiotic fusidic acid blocks ribosome disassembly by EF-G/RRF at a 1000-fold lower concentration than required for the inhibition of EF-G turnover in vitro and close to the effective inhibitory concentration in vivo, suggesting that the antimicrobial activity of fusidic acid is primarily due to the direct inhibition of ribosome recycling. Our results indicate that conformational coupling between EF-G and the ribosome is principally different in translocation and ribosome disassembly. Pi release is not required for the mechanochemical function of EF-G in translocation, whereas the interactions between RRF and EF-G introduce tight coupling between the conformational change of EF-G induced by Pi release and ribosome disassembly.

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Year:  2009        PMID: 19324963      PMCID: PMC2673078          DOI: 10.1261/rna.1592509

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  55 in total

1.  Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome.

Authors:  Berthold Wilden; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-29       Impact factor: 11.205

2.  Deletion of a conserved, central ribosomal intersubunit RNA bridge.

Authors:  Iraj K Ali; Laura Lancaster; Jason Feinberg; Simpson Joseph; Harry F Noller
Journal:  Mol Cell       Date:  2006-09-15       Impact factor: 17.970

3.  EF-G-dependent GTPase on the ribosome. conformational change and fusidic acid inhibition.

Authors:  Hyuk-Soo Seo; Sameem Abedin; Detlev Kamp; Daniel N Wilson; Knud H Nierhaus; Barry S Cooperman
Journal:  Biochemistry       Date:  2006-02-28       Impact factor: 3.162

4.  Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome.

Authors:  P Clint Spiegel; Dmitri N Ermolenko; Harry F Noller
Journal:  RNA       Date:  2007-07-13       Impact factor: 4.942

5.  Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits.

Authors:  Chandana Barat; Partha P Datta; V Samuel Raj; Manjuli R Sharma; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2007-07-20       Impact factor: 17.970

6.  Control of phosphate release from elongation factor G by ribosomal protein L7/12.

Authors:  Andreas Savelsbergh; Dagmar Mohr; Ute Kothe; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  EMBO J       Date:  2005-11-17       Impact factor: 11.598

7.  The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits.

Authors:  Go Hirokawa; Romana M Nijman; V Samuel Raj; Hideko Kaji; Kazuei Igarashi; Akira Kaji
Journal:  RNA       Date:  2005-08       Impact factor: 4.942

8.  Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.

Authors:  Maria A Borovinskaya; Raj D Pai; Wen Zhang; Barbara S Schuwirth; James M Holton; Go Hirokawa; Hideko Kaji; Akira Kaji; Jamie H Doudna Cate
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

9.  Crystal structure of the ribosome recycling factor bound to the ribosome.

Authors:  Albert Weixlbaumer; Sabine Petry; Christine M Dunham; Maria Selmer; Ann C Kelley; V Ramakrishnan
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

10.  Guanine-nucleotide exchange on ribosome-bound elongation factor G initiates the translocation of tRNAs.

Authors:  Andrey V Zavialov; Vasili V Hauryliuk; Måns Ehrenberg
Journal:  J Biol       Date:  2005-06-27
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  61 in total

1.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

Review 2.  Exit from dormancy in microbial organisms.

Authors:  Jonathan Dworkin; Ishita M Shah
Journal:  Nat Rev Microbiol       Date:  2010-10-25       Impact factor: 60.633

3.  Ribosome clearance by FusB-type proteins mediates resistance to the antibiotic fusidic acid.

Authors:  Georgina Cox; Gary S Thompson; Huw T Jenkins; Frank Peske; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer; Steve W Homans; Thomas A Edwards; Alexander J O'Neill
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-20       Impact factor: 11.205

4.  Comparative analysis of the extracellular proteomes of two Clostridium sordellii strains exhibiting contrasting virulence.

Authors:  Maureen T Kachman; Mary C Hurley; Teri Thiele; Geetha Srinivas; David M Aronoff
Journal:  Anaerobe       Date:  2010-03-23       Impact factor: 3.331

Review 5.  Ribosome-targeting antibiotics and mechanisms of bacterial resistance.

Authors:  Daniel N Wilson
Journal:  Nat Rev Microbiol       Date:  2014-01       Impact factor: 60.633

6.  A fast dynamic mode of the EF-G-bound ribosome.

Authors:  James B Munro; Roger B Altman; Chang-Shung Tung; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

7.  Dissecting macromolecular recognition sites in ribosome: implication to its self-assembly.

Authors:  Smita P Pilla; Amal Thomas; Ranjit Prasad Bahadur
Journal:  RNA Biol       Date:  2019-06-17       Impact factor: 4.652

8.  GTP hydrolysis by EF-G synchronizes tRNA movement on small and large ribosomal subunits.

Authors:  Wolf Holtkamp; Carlos E Cunha; Frank Peske; Andrey L Konevega; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  EMBO J       Date:  2014-03-10       Impact factor: 11.598

9.  Following movement of domain IV of elongation factor G during ribosomal translocation.

Authors:  Enea Salsi; Elie Farah; Jillian Dann; Dmitri N Ermolenko
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

10.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

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