Literature DB >> 16292341

Control of phosphate release from elongation factor G by ribosomal protein L7/12.

Andreas Savelsbergh1, Dagmar Mohr, Ute Kothe, Wolfgang Wintermeyer, Marina V Rodnina.   

Abstract

Ribosomal protein L7/12 is crucial for the function of elongation factor G (EF-G) on the ribosome. Here, we report the localization of a site in the C-terminal domain (CTD) of L7/12 that is critical for the interaction with EF-G. Single conserved surface amino acids were replaced in the CTD of L7/12. Whereas mutations in helices 5 and 6 had no effect, replacements of V66, I69, K70, and R73 in helix 4 increased the Michaelis constant (KM) of EF-G.GTP for the ribosome, suggesting an involvement of these residues in EF-G binding. The mutations did not appreciably affect rapid single-round GTP hydrolysis and had no effect on tRNA translocation on the ribosome. In contrast, the release of inorganic phosphate (Pi) from ribosome-bound EF-G.GDP.Pi was strongly inhibited and became rate-limiting for the turnover of EF-G. The control of Pi release by interactions between EF-G and L7/12 appears to be important for maintaining the conformational coupling between EF-G and the ribosome for translocation and for timing the dissociation of the factor from the ribosome.

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Year:  2005        PMID: 16292341      PMCID: PMC1356325          DOI: 10.1038/sj.emboj.7600884

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  41 in total

1.  From structure and dynamics of protein L7/L12 to molecular switching in ribosome.

Authors:  Eduard V Bocharov; Alexander G Sobol; Konstantin V Pavlov; Dmitry M Korzhnev; Victor A Jaravine; Anatoly T Gudkov; Alexander S Arseniev
Journal:  J Biol Chem       Date:  2004-02-11       Impact factor: 5.157

2.  Kinetics and thermodynamics of RRF, EF-G, and thiostrepton interaction on the Escherichia coli ribosome.

Authors:  Hyuk-Soo Seo; Michael Kiel; Dongli Pan; V Samuel Raj; Akira Kaji; Barry S Cooperman
Journal:  Biochemistry       Date:  2004-10-12       Impact factor: 3.162

3.  Elongation factor-dependent reactions of ribosomes deprived of proteins L7 and L12.

Authors:  V E Koteliansky; S P Domogatsky; A T Gudkov; A S Spirin
Journal:  FEBS Lett       Date:  1977-01-15       Impact factor: 4.124

4.  Requirement of an Escherichia coli 50 S ribosomal protein component for effective interaction of the ribosome with T and G factors and with guanosine triphosphate.

Authors:  E Hamel; M Koka; T Nakamoto
Journal:  J Biol Chem       Date:  1972-02-10       Impact factor: 5.157

5.  Reconstitution of a GTPase activity by a 50S ribosomal protein and E. coli.

Authors:  K Kischa; W Möller; G Stöffler
Journal:  Nat New Biol       Date:  1971-09-08

6.  Initiation of protein synthesis II. A convenient assay for the ribosome-dependent synthesis of N-formyl-C14-methionylpuromycin.

Authors:  P Leder; H Bursztyn
Journal:  Biochem Biophys Res Commun       Date:  1966-10-20       Impact factor: 3.575

7.  A comparative study of the 50S ribosomal subunit and several 50S subparticles in EF-T-and EF-G-dependent activities.

Authors:  G Sander; R C Marsh; J Voigt; A Parmeggiani
Journal:  Biochemistry       Date:  1975-05-06       Impact factor: 3.162

8.  Stepwise elongation factor G-promoted elongation of polypeptides on the ribosome without GTP cleavage.

Authors:  N V Belitsina; M A Glukhova; A S Spirin
Journal:  J Mol Biol       Date:  1976-12-15       Impact factor: 5.469

9.  Equilibrium measurements of the interactions of guanine nucleotides with Escherichia coli elongation factor G and the ribosome.

Authors:  O G Baca; M S Rohrbach; J W Bodley
Journal:  Biochemistry       Date:  1976-10-19       Impact factor: 3.162

10.  Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome.

Authors:  Ute Kothe; Hans-Joachim Wieden; Dagmar Mohr; Marina V Rodnina
Journal:  J Mol Biol       Date:  2004-03-05       Impact factor: 5.469

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  59 in total

1.  Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus.

Authors:  Naoko Nomura; Takayoshi Honda; Kentaro Baba; Takao Naganuma; Takehito Tanzawa; Fumio Arisaka; Masanori Noda; Susumu Uchiyama; Isao Tanaka; Min Yao; Toshio Uchiumi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

2.  A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases.

Authors:  Li Wang; Fang Yang; Dejiu Zhang; Zhi Chen; Rui-Ming Xu; Knud H Nierhaus; Weimin Gong; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2012-03-11       Impact factor: 15.369

3.  Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy.

Authors:  Niels Fischer; Andrey L Konevega; Wolfgang Wintermeyer; Marina V Rodnina; Holger Stark
Journal:  Nature       Date:  2010-07-15       Impact factor: 49.962

4.  Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation.

Authors:  Nina Clementi; Anna Chirkova; Barbara Puffer; Ronald Micura; Norbert Polacek
Journal:  Nat Chem Biol       Date:  2010-03-28       Impact factor: 15.040

5.  Pentameric organization of the ribosomal stalk accelerates recruitment of ricin a chain to the ribosome for depurination.

Authors:  Xiao-Ping Li; Przemyslaw Grela; Dawid Krokowski; Marek Tchórzewski; Nilgun E Tumer
Journal:  J Biol Chem       Date:  2010-10-25       Impact factor: 5.157

6.  Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome.

Authors:  Berthold Wilden; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-29       Impact factor: 11.205

7.  Reverse translocation of tRNA in the ribosome.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  Mol Cell       Date:  2006-12-28       Impact factor: 17.970

8.  Kinetically competent intermediates in the translocation step of protein synthesis.

Authors:  Dongli Pan; Stanislav V Kirillov; Barry S Cooperman
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

Review 9.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

10.  A two-step binding model proposed for the electrostatic interactions of ricin a chain with ribosomes.

Authors:  Xiao-Ping Li; Jia-Chi Chiou; Miguel Remacha; Juan P G Ballesta; Nilgun E Tumer
Journal:  Biochemistry       Date:  2009-05-12       Impact factor: 3.162

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