Literature DB >> 24614227

GTP hydrolysis by EF-G synchronizes tRNA movement on small and large ribosomal subunits.

Wolf Holtkamp1, Carlos E Cunha, Frank Peske, Andrey L Konevega, Wolfgang Wintermeyer, Marina V Rodnina.   

Abstract

Elongation factor G (EF-G) promotes the movement of two tRNAs and the mRNA through the ribosome in each cycle of peptide elongation. During translocation, the tRNAs transiently occupy intermediate positions on both small (30S) and large (50S) ribosomal subunits. How EF-G and GTP hydrolysis control these movements is still unclear. We used fluorescence labels that specifically monitor movements on either 30S or 50S subunits in combination with EF-G mutants and translocation-specific antibiotics to investigate timing and energetics of translocation. We show that EF-G-GTP facilitates synchronous movements of peptidyl-tRNA on the two subunits into an early post-translocation state, which resembles a chimeric state identified by structural studies. EF-G binding without GTP hydrolysis promotes only partial tRNA movement on the 50S subunit. However, rapid 30S translocation and the concomitant completion of 50S translocation require GTP hydrolysis and a functional domain 4 of EF-G. Our results reveal two distinct modes for utilizing the energy of EF-G binding and GTP hydrolysis and suggest that coupling of GTP hydrolysis to translocation is mediated through rearrangements of the 30S subunit.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24614227      PMCID: PMC4193938          DOI: 10.1002/embj.201387465

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  82 in total

1.  Conformationally restricted elongation factor G retains GTPase activity but is inactive in translocation on the ribosome.

Authors:  F Peske; N B Matassova; A Savelsbergh; M V Rodnina; W Wintermeyer
Journal:  Mol Cell       Date:  2000-08       Impact factor: 17.970

2.  Peptidyl-tRNA regulates the GTPase activity of translation factors.

Authors:  Andrey V Zavialov; Måns Ehrenberg
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

3.  Transient kinetics, fluorescence, and FRET in studies of initiation of translation in bacteria.

Authors:  Pohl Milon; Andrey L Konevega; Frank Peske; Attilio Fabbretti; Claudio O Gualerzi; Marina V Rodnina
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

4.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

5.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

6.  Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome.

Authors:  Vladimir I Katunin; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

7.  Role of domains 4 and 5 in elongation factor G functions on the ribosome.

Authors:  A Savelsbergh; N B Matassova; M V Rodnina; W Wintermeyer
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

8.  Contribution of intersubunit bridges to the energy barrier of ribosomal translocation.

Authors:  Qi Liu; Kurt Fredrick
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

9.  mRNA translocation occurs during the second step of ribosomal intersubunit rotation.

Authors:  Dmitri N Ermolenko; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2011-03-13       Impact factor: 15.369

10.  Colicin E3 cleavage of 16S rRNA impairs decoding and accelerates tRNA translocation on Escherichia coli ribosomes.

Authors:  Lorna E Lancaster; Andreas Savelsbergh; Colin Kleanthous; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Mol Microbiol       Date:  2008-07       Impact factor: 3.501

View more
  43 in total

1.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

Review 2.  Dynamic basis of fidelity and speed in translation: Coordinated multistep mechanisms of elongation and termination.

Authors:  Arjun Prabhakar; Junhong Choi; Jinfan Wang; Alexey Petrov; Joseph D Puglisi
Journal:  Protein Sci       Date:  2017-05-23       Impact factor: 6.725

3.  Following movement of domain IV of elongation factor G during ribosomal translocation.

Authors:  Enea Salsi; Elie Farah; Jillian Dann; Dmitri N Ermolenko
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

4.  Choreography of molecular movements during ribosome progression along mRNA.

Authors:  Riccardo Belardinelli; Heena Sharma; Neva Caliskan; Carlos E Cunha; Frank Peske; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Nat Struct Mol Biol       Date:  2016-03-21       Impact factor: 15.369

5.  EF-Tu and EF-G are activated by allosteric effects.

Authors:  Dibyendu Mondal; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

6.  Translocation as continuous movement through the ribosome.

Authors:  Riccardo Belardinelli; Heena Sharma; Frank Peske; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  RNA Biol       Date:  2016-11-01       Impact factor: 4.652

7.  Movement of elongation factor G between compact and extended conformations.

Authors:  Enea Salsi; Elie Farah; Zoe Netter; Jillian Dann; Dmitri N Ermolenko
Journal:  J Mol Biol       Date:  2014-11-15       Impact factor: 5.469

8.  EF-G Activation by Phosphate Analogs.

Authors:  Enea Salsi; Elie Farah; Dmitri N Ermolenko
Journal:  J Mol Biol       Date:  2016-04-08       Impact factor: 5.469

9.  The ATPase Fap7 Tests the Ability to Carry Out Translocation-like Conformational Changes and Releases Dim1 during 40S Ribosome Maturation.

Authors:  Homa Ghalei; Juliette Trepreau; Jason C Collins; Hari Bhaskaran; Bethany S Strunk; Katrin Karbstein
Journal:  Mol Cell       Date:  2017-09-07       Impact factor: 17.970

10.  Ensemble and single-molecule FRET studies of protein synthesis.

Authors:  Wan-Jung C Lai; Dmitri N Ermolenko
Journal:  Methods       Date:  2017-12-13       Impact factor: 3.608

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.