Literature DB >> 25288752

Following movement of domain IV of elongation factor G during ribosomal translocation.

Enea Salsi1, Elie Farah1, Jillian Dann1, Dmitri N Ermolenko2.   

Abstract

Translocation of mRNA and tRNAs through the ribosome is catalyzed by a universally conserved elongation factor (EF-G in prokaryotes and EF-2 in eukaryotes). Previous studies have suggested that ribosome-bound EF-G undergoes significant structural rearrangements. Here, we follow the movement of domain IV of EF-G, which is critical for the catalysis of translocation, relative to protein S12 of the small ribosomal subunit using single-molecule FRET. We show that ribosome-bound EF-G adopts distinct conformations corresponding to the pre- and posttranslocation states of the ribosome. Our results suggest that, upon ribosomal translocation, domain IV of EF-G moves toward the A site of the small ribosomal subunit and facilitates the movement of peptidyl-tRNA from the A to the P site. We found no evidence of direct coupling between the observed movement of domain IV of EF-G and GTP hydrolysis. In addition, our results suggest that the pretranslocation conformation of the EF-G-ribosome complex is significantly less stable than the posttranslocation conformation. Hence, the structural rearrangement of EF-G makes a considerable energetic contribution to promoting tRNA translocation.

Entities:  

Keywords:  ribosome; single-molecule FRET; tRNA translocation; viomycin

Mesh:

Substances:

Year:  2014        PMID: 25288752      PMCID: PMC4210333          DOI: 10.1073/pnas.1410873111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome.

Authors:  Sean M Studer; Jason S Feinberg; Simpson Joseph
Journal:  J Mol Biol       Date:  2003-03-21       Impact factor: 5.469

2.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

3.  tRNA dynamics on the ribosome during translation.

Authors:  Scott C Blanchard; Harold D Kim; Ruben L Gonzalez; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

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Authors:  D Moazed; H F Noller
Journal:  Nature       Date:  1989-11-09       Impact factor: 49.962

5.  The inhibition of ribosomal translocation by viomycin.

Authors:  J Modolell
Journal:  Eur J Biochem       Date:  1977-12

6.  ADP-ribosylated elongation factor 2 (ADP-ribosyl-EF-2) is unable to promote translocation within the ribosome.

Authors:  E K Davydova; L P Ovchinnikov
Journal:  FEBS Lett       Date:  1990-02-26       Impact factor: 4.124

7.  Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation.

Authors:  Frank Peske; Andreas Savelsbergh; Vladimir I Katunin; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

8.  Catalysis of ribosomal translocation by sparsomycin.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Science       Date:  2003-05-16       Impact factor: 47.728

9.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

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Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

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  20 in total

1.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

2.  Observation of preQ1-II riboswitch dynamics using single-molecule FRET.

Authors:  Chandani Warnasooriya; Clarence Ling; Ivan A Belashov; Mohammad Salim; Joseph E Wedekind; Dmitri N Ermolenko
Journal:  RNA Biol       Date:  2018-10-30       Impact factor: 4.652

3.  Movement of elongation factor G between compact and extended conformations.

Authors:  Enea Salsi; Elie Farah; Zoe Netter; Jillian Dann; Dmitri N Ermolenko
Journal:  J Mol Biol       Date:  2014-11-15       Impact factor: 5.469

4.  EF-G Activation by Phosphate Analogs.

Authors:  Enea Salsi; Elie Farah; Dmitri N Ermolenko
Journal:  J Mol Biol       Date:  2016-04-08       Impact factor: 5.469

5.  Ensemble and single-molecule FRET studies of protein synthesis.

Authors:  Wan-Jung C Lai; Dmitri N Ermolenko
Journal:  Methods       Date:  2017-12-13       Impact factor: 3.608

6.  Elongation factor G initiates translocation through a power stroke.

Authors:  Chunlai Chen; Xiaonan Cui; John F Beausang; Haibo Zhang; Ian Farrell; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-16       Impact factor: 11.205

7.  Conformational changes of elongation factor G on the ribosome during tRNA translocation.

Authors:  Jinzhong Lin; Matthieu G Gagnon; David Bulkley; Thomas A Steitz
Journal:  Cell       Date:  2015-01-15       Impact factor: 41.582

Review 8.  The energetics of subunit rotation in the ribosome.

Authors:  Asem Hassan; Sandra Byju; Paul C Whitford
Journal:  Biophys Rev       Date:  2021-12-04

9.  Fluctuations between multiple EF-G-induced chimeric tRNA states during translocation on the ribosome.

Authors:  Sarah Adio; Tamara Senyushkina; Frank Peske; Niels Fischer; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Nat Commun       Date:  2015-06-15       Impact factor: 14.919

10.  A conserved histidine in switch-II of EF-G moderates release of inorganic phosphate.

Authors:  Ravi Kiran Koripella; Mikael Holm; Daniel Dourado; Chandra Sekhar Mandava; Samuel Flores; Suparna Sanyal
Journal:  Sci Rep       Date:  2015-08-12       Impact factor: 4.379

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