Literature DB >> 16973438

Deletion of a conserved, central ribosomal intersubunit RNA bridge.

Iraj K Ali1, Laura Lancaster, Jason Feinberg, Simpson Joseph, Harry F Noller.   

Abstract

Elucidation of the structure of the ribosome has stimulated numerous proposals for the roles of specific rRNA elements, including the universally conserved helix 69 (H69) of 23S rRNA, which forms intersubunit bridge B2a and contacts the D stems of A- and P-site tRNAs. H69 has been proposed to be involved not only in subunit association and tRNA binding but also in initiation, translocation, translational accuracy, the peptidyl transferase reaction, and ribosome recycling. Consistent with such proposals, deletion of H69 confers a dominant lethal phenotype. Remarkably, in vitro assays show that affinity-purified Deltah69 ribosomes have normal translational accuracy, synthesize a full-length protein from a natural mRNA template, and support EF-G-dependent translocation at wild-type rates. However, Deltah69 50S subunits are unable to associate with 30S subunits in the absence of tRNA, are defective in RF1-catalyzed peptide release, and can be recycled in the absence of RRF.

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Year:  2006        PMID: 16973438     DOI: 10.1016/j.molcel.2006.08.011

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  64 in total

1.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

2.  Functional elucidation of a key contact between tRNA and the large ribosomal subunit rRNA during decoding.

Authors:  Rodrigo F Ortiz-Meoz; Rachel Green
Journal:  RNA       Date:  2010-08-25       Impact factor: 4.942

3.  Recognition of the amber UAG stop codon by release factor RF1.

Authors:  Andrei Korostelev; Jianyu Zhu; Haruichi Asahara; Harry F Noller
Journal:  EMBO J       Date:  2010-06-29       Impact factor: 11.598

4.  Roles of helix H69 of 23S rRNA in translation initiation.

Authors:  Qi Liu; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

Review 5.  Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications.

Authors:  Christine S Chow; Tek N Lamichhane; Santosh K Mahto
Journal:  ACS Chem Biol       Date:  2007-09-21       Impact factor: 5.100

6.  Interaction between the ribosomal subunits: 16S rRNA suppressors of the lethal DeltaA1916 mutation in the 23S rRNA of Escherichia coli.

Authors:  Michael O'connor
Journal:  Mol Genet Genomics       Date:  2007-06-13       Impact factor: 3.291

7.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

8.  Suppression of DeltabipA phenotypes in Escherichia coli by abolishment of pseudouridylation at specific sites on the 23S rRNA.

Authors:  Karthik Krishnan; Ann M Flower
Journal:  J Bacteriol       Date:  2008-09-26       Impact factor: 3.490

9.  The sarcin-ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit.

Authors:  Laura Lancaster; Nicole J Lambert; Eric J Maklan; Lucas H Horan; Harry F Noller
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

10.  RluD, a highly conserved pseudouridine synthase, modifies 50S subunits more specifically and efficiently than free 23S rRNA.

Authors:  Pavanapuresan P Vaidyanathan; Murray P Deutscher; Arun Malhotra
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

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