Literature DB >> 16940356

Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome.

Berthold Wilden1, Andreas Savelsbergh, Marina V Rodnina, Wolfgang Wintermeyer.   

Abstract

The translocation of tRNA and mRNA through the ribosome is promoted by elongation factor G (EF-G), a GTPase that hydrolyzes GTP during the reaction. Recently, it was reported that, in contrast to previous observations, the affinity of EF-G was much weaker for GTP than for GDP and that ribosome-catalyzed GDP-GTP exchange would be required for translocation [Zavialov AV, Hauryliuk VV, Ehrenberg M (2005) J Biol 4:9]. We have reinvestigated GTP/GDP binding and show that EF-G binds GTP and GDP with affinities in the 20 to 40 microM range (37 degrees C), in accordance with earlier reports. Furthermore, GDP exchange, which is extremely rapid on unbound EF-G, is retarded, rather than accelerated, on the ribosome, which, therefore, is not a nucleotide-exchange factor for EF-G. The EF-G.GDPNP complex, which is very labile, is stabilized 30,000-fold by binding to the ribosome. These findings, together with earlier kinetic results, reveal that EF-G enters the pretranslocation ribosome in the GTP-bound form and indicate that, upon ribosome-complex formation, the nucleotide-binding pocket of EF-G is closed, presumably in conjunction with GTPase activation. GTP hydrolysis is required for rapid tRNA-mRNA movement, and P(i) release induces further rearrangements of both EF-G and the ribosome that are required for EF-G turnover.

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Year:  2006        PMID: 16940356      PMCID: PMC1564220          DOI: 10.1073/pnas.0606099103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

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  59 in total

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2.  Ribosome clearance by FusB-type proteins mediates resistance to the antibiotic fusidic acid.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-20       Impact factor: 11.205

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Authors:  James B Munro; Roger B Altman; Nathan O'Connor; Scott C Blanchard
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

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Authors:  Dongli Pan; Stanislav V Kirillov; Barry S Cooperman
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

5.  Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation.

Authors:  Derek J Taylor; Jakob Nilsson; A Rod Merrill; Gregers Rom Andersen; Poul Nissen; Joachim Frank
Journal:  EMBO J       Date:  2007-04-19       Impact factor: 11.598

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Authors:  P Clint Spiegel; Dmitri N Ermolenko; Harry F Noller
Journal:  RNA       Date:  2007-07-13       Impact factor: 4.942

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Authors:  Joachim Frank; Haixiao Gao; Jayati Sengupta; Ning Gao; Derek J Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

8.  Conformation of the signal recognition particle in ribosomal targeting complexes.

Authors:  Iwona A Buskiewicz; Johannes Jöckel; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

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Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

10.  Structural basis for hygromycin B inhibition of protein biosynthesis.

Authors:  Maria A Borovinskaya; Shinichiro Shoji; Kurt Fredrick; Jamie H D Cate
Journal:  RNA       Date:  2008-06-20       Impact factor: 4.942

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