Literature DB >> 16043510

The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits.

Go Hirokawa1, Romana M Nijman, V Samuel Raj, Hideko Kaji, Kazuei Igarashi, Akira Kaji.   

Abstract

Protein synthesis is initiated on ribosomal subunits. However, it is not known how 70S ribosomes are dissociated into small and large subunits. Here we show that 70S ribosomes, as well as the model post-termination complexes, are dissociated into stable subunits by cooperative action of three translation factors: ribosome recycling factor (RRF), elongation factor G (EF-G), and initiation factor 3 (IF3). The subunit dissociation is stable enough to be detected by conventional sucrose density gradient centrifugation (SDGC). GTP, but not nonhydrolyzable GTP analog, is essential in this process. We found that RRF and EF-G alone transiently dissociate 70S ribosomes. However, the transient dissociation cannot be detected by SDGC. IF3 stabilizes the dissociation by binding to the transiently formed 30S subunits, preventing re-association back to 70S ribosomes. The three-factor-dependent stable dissociation of ribosomes into subunits completes the ribosome cycle and the resulting subunits are ready for the next round of translation.

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Year:  2005        PMID: 16043510      PMCID: PMC1370814          DOI: 10.1261/rna.2520405

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  47 in total

Review 1.  The fourth step of protein synthesis: disassembly of the posttermination complex is catalyzed by elongation factor G and ribosome recycling factor, a near-perfect mimic of tRNA.

Authors:  A Kaji; M C Kiel; G Hirokawa; A R Muto; Y Inokuchi; H Kaji
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

2.  Requirement for ribosome-releasing factor for the release of ribosomes at the termination codon.

Authors:  K Ogawa; A Kaji
Journal:  Eur J Biochem       Date:  1975-10-15

3.  Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs.

Authors:  Isabella Moll; Go Hirokawa; Michael C Kiel; Akira Kaji; Udo Bläsi
Journal:  Nucleic Acids Res       Date:  2004-06-23       Impact factor: 16.971

4.  Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.

Authors:  Rajendra K Agrawal; Manjuli R Sharma; Michael C Kiel; Go Hirokawa; Timothy M Booth; Christian M T Spahn; Robert A Grassucci; Akira Kaji; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

5.  In vivo effect of inactivation of ribosome recycling factor - fate of ribosomes after unscheduled translation downstream of open reading frame.

Authors:  Go Hirokawa; Hachiro Inokuchi; Hideko Kaji; Kazuei Igarashi; Akira Kaji
Journal:  Mol Microbiol       Date:  2004-11       Impact factor: 3.501

6.  Studies on translocation. 3. Conditions necessary for the formation and detection of a stable ribosome-G factor-guanosine diphosphate complex in the presence of fusidic acid.

Authors:  J W Bodley; F J Zieve; L Lin; S T Zieve
Journal:  J Biol Chem       Date:  1970-11-10       Impact factor: 5.157

7.  Initiation of protein synthesis: a critical test of the 30S subunit model.

Authors:  C Guthrie; M Nomura
Journal:  Nature       Date:  1968-07-20       Impact factor: 49.962

8.  Polypeptide chain termination in vitro: isolation of a release factor.

Authors:  M R Capecchi
Journal:  Proc Natl Acad Sci U S A       Date:  1967-09       Impact factor: 11.205

9.  Sequential translation of trinucleotide codons for the initiation and termination of protein synthesis.

Authors:  C T Caskey; R Tompkins; E Scolnick; T Caryk; M Nirenberg
Journal:  Science       Date:  1968-10-04       Impact factor: 47.728

10.  Nucleoside triphosphate regeneration decreases the frequency of translation errors.

Authors:  P C Jelenc; C G Kurland
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

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  44 in total

1.  Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP.

Authors:  Shinya Kurata; Klaus H Nielsen; Sarah F Mitchell; Jon R Lorsch; Akira Kaji; Hideko Kaji
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

Review 3.  Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

Authors:  Anuradha Seshadri; Umesh Varshney
Journal:  J Biosci       Date:  2006-06       Impact factor: 1.826

4.  Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA Dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli.

Authors:  Ming Gong; Luis R Cruz-Vera; Charles Yanofsky
Journal:  J Bacteriol       Date:  2007-02-09       Impact factor: 3.490

5.  PSRP1 is not a ribosomal protein, but a ribosome-binding factor that is recycled by the ribosome-recycling factor (RRF) and elongation factor G (EF-G).

Authors:  Manjuli R Sharma; Alexandra Dönhöfer; Chandana Barat; Viter Marquez; Partha P Datta; Paola Fucini; Daniel N Wilson; Rajendra K Agrawal
Journal:  J Biol Chem       Date:  2009-12-04       Impact factor: 5.157

6.  Dissecting macromolecular recognition sites in ribosome: implication to its self-assembly.

Authors:  Smita P Pilla; Amal Thomas; Ranjit Prasad Bahadur
Journal:  RNA Biol       Date:  2019-06-17       Impact factor: 4.652

7.  In vivo biochemistry in bacterial cells using FRAP: insight into the translation cycle.

Authors:  Paula Montero Llopis; Oleksii Sliusarenko; Jennifer Heinritz; Christine Jacobs-Wagner
Journal:  Biophys J       Date:  2012-11-07       Impact factor: 4.033

8.  Pneumococcal RNase R globally impacts protein synthesis by regulating the amount of actively translating ribosomes.

Authors:  Cátia Bárria; Susana Domingues; Cecília Maria Arraiano
Journal:  RNA Biol       Date:  2019-01-13       Impact factor: 4.652

9.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

10.  Allosteric control of the ribosome by small-molecule antibiotics.

Authors:  Leyi Wang; Arto Pulk; Michael R Wasserman; Michael B Feldman; Roger B Altman; Jamie H Doudna Cate; Scott C Blanchard
Journal:  Nat Struct Mol Biol       Date:  2012-08-19       Impact factor: 15.369

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