Literature DB >> 18052145

Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Heather L Frericks Schmidt1, Lindsay J Sperling, Yi Gui Gao, Benjamin J Wylie, John M Boettcher, Scott R Wilson, Chad M Rienstra.   

Abstract

The study of micro- or nanocrystalline proteins by magic-angle spinning (MAS) solid-state NMR (SSNMR) gives atomic-resolution insight into structure in cases when single crystals cannot be obtained for diffraction studies. Subtle differences in the local chemical environment around the protein, including the characteristics of the cosolvent and the buffer, determine whether a protein will form single crystals. The impact of these small changes in formulation is also evident in the SSNMR spectra; however, the changes lead only to correspondingly subtle changes in the spectra. Here, we demonstrate that several formulations of GB1 microcrystals yield very high quality SSNMR spectra, although only a subset of conditions enable growth of single crystals. We have characterized these polymorphs by X-ray powder diffraction and assigned the SSNMR spectra. Assignments of the 13C and 15N SSNMR chemical shifts confirm that the backbone structure is conserved, indicative of a common protein fold, but side chain chemical shifts are changed on the surface of the protein, in a manner dependent upon crystal packing and electrostatic interactions with salt in the mother liquor. Our results demonstrate the ability of SSNMR to reveal minor structural differences among crystal polymorphs. This ability has potential practical utility for studying the formulation chemistry of industrial and therapeutic proteins, as well as for deriving fundamental insights into the phenomenon of single-crystal growth.

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Year:  2007        PMID: 18052145      PMCID: PMC2774121          DOI: 10.1021/jp075531p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  35 in total

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2.  Band-selective 13C homonuclear 3D spectroscopy for solid proteins at high field with rotor-synchronized soft pulses.

Authors:  Donghua H Zhou; Kathryn D Kloepper; Kem A Winter; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

3.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

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Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

4.  High-resolution solid-state NMR studies on uniformly [13C,15N]-labeled ubiquitin.

Authors:  Karsten Seidel; Manuel Etzkorn; Henrike Heise; Stefan Becker; Marc Baldus
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

5.  Novel long-acting crystal formulation of human growth hormone.

Authors:  Chandrika Govardhan; Nazer Khalaf; Chu W Jung; Ben Simeone; Amy Higbie; Susan Qu; Letha Chemmalil; Sergey Pechenov; Sujit K Basu; Alexey L Margolin
Journal:  Pharm Res       Date:  2005-08-24       Impact factor: 4.200

6.  Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.

Authors:  T Gallagher; P Alexander; P Bryan; G L Gilliland
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7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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8.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

9.  Backbone conformational constraints in a microcrystalline U-15N-labeled protein by 3D dipolar-shift solid-state NMR spectroscopy.

Authors:  W Trent Franks; Benjamin J Wylie; Sara A Stellfox; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

10.  13C NMR chemical shifts of the triclinic and monoclinic crystal forms of valinomycin.

Authors:  Tsunenori Kameda; Gary McGeorge; Anita M Orendt; David M Grant
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

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  51 in total

1.  Thermodynamic and Structural Impact of α,α-Dialkylated Residue Incorporation in a β-Hairpin Peptide.

Authors:  Megan A Karnes; Shelby L Schettler; Halina M Werner; Alana F Kurz; W Seth Horne; George A Lengyel
Journal:  Org Lett       Date:  2016-07-20       Impact factor: 6.005

2.  Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Authors:  Matthew T Eddy; Marina Belenky; Astrid C Sivertsen; Robert G Griffin; Judith Herzfeld
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

3.  Nano-mole scale sequential signal assignment by (1)H-detected protein solid-state NMR.

Authors:  Songlin Wang; Sudhakar Parthasarathy; Yiling Xiao; Yusuke Nishiyama; Fei Long; Isamu Matsuda; Yuki Endo; Takahiro Nemoto; Kazuo Yamauchi; Tetsuo Asakura; Mitsuhiro Takeda; Tsutomu Terauchi; Masatsune Kainosho; Yoshitaka Ishii
Journal:  Chem Commun (Camb)       Date:  2015-08-28       Impact factor: 6.222

4.  Resolution enhancement by homonuclear J-decoupling: application to three-dimensional solid-state magic angle spinning NMR spectroscopy.

Authors:  Lichi Shi; Xiaohu Peng; Mumdooh A M Ahmed; Dale Edwards; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2008-04-11       Impact factor: 2.835

5.  Targeted 13C-13C distance measurements in a microcrystalline protein via J-decoupled rotational resonance width measurements.

Authors:  Patrick C A van der Wel; Matthew T Eddy; Ramesh Ramachandran; Robert G Griffin
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

6.  Atomic resolution protein structure determination by three-dimensional transferred echo double resonance solid-state nuclear magnetic resonance spectroscopy.

Authors:  Andrew J Nieuwkoop; Benjamin J Wylie; W Trent Franks; Gautam J Shah; Chad M Rienstra
Journal:  J Chem Phys       Date:  2009-09-07       Impact factor: 3.488

7.  Further Optimization and Validation of the Classical Drude Polarizable Protein Force Field.

Authors:  Fang-Yu Lin; Jing Huang; Poonam Pandey; Chetan Rupakheti; Jing Li; Benoı T Roux; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2020-04-27       Impact factor: 6.006

8.  Accurate measurements of the effects of deuteration at backbone amide positions on the chemical shifts of ¹⁵N, ¹³Cα, ¹³Cβ, ¹³CO and ¹Hα nuclei in proteins.

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Journal:  J Biomol NMR       Date:  2013-04-24       Impact factor: 2.835

9.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

10.  Spectroscopy by integration of frequency and time domain information for fast acquisition of high-resolution dark spectra.

Authors:  Yoh Matsuki; Matthew T Eddy; Judith Herzfeld
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

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