Literature DB >> 19279327

The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation.

Pierre-Alexis Gros1, Hervé Le Nagard, Olivier Tenaillon.   

Abstract

The epistatic interactions among mutations have a large effect on the evolution of populations. In this article we provide a formalism under which epistatic interactions among pairs of mutations have a distribution whose mean can be modulated. We find that the mean epistasis is correlated to the effect of mutations or genetic robustness, which suggests that such formalism is in good agreement with most in silico models of evolution where the same pattern is observed. We further show that the evolution of epistasis is highly dependant on the intensity of drift and of how complex the organisms are, and that either positive or negative epistasis could be selected for, depending on the balance between the efficiency of selection and the intensity of drift.

Mesh:

Year:  2009        PMID: 19279327      PMCID: PMC2674823          DOI: 10.1534/genetics.108.099127

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  57 in total

1.  Neutral evolution of mutational robustness.

Authors:  E van Nimwegen; J P Crutchfield; M Huynen
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Selection for recombination in small populations.

Authors:  S P Otto; N H Barton
Journal:  Evolution       Date:  2001-10       Impact factor: 3.694

3.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

4.  Fisher's microscope and Haldane's ellipse.

Authors:  D Waxman; J J Welch
Journal:  Am Nat       Date:  2005-08-05       Impact factor: 3.926

5.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

Review 6.  A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2006-05       Impact factor: 3.694

7.  Epistatic buffering of fitness loss in yeast double deletion strains.

Authors:  Lukasz Jasnos; Ryszard Korona
Journal:  Nat Genet       Date:  2007-02-25       Impact factor: 38.330

8.  Effect of varying epistasis on the evolution of recombination.

Authors:  Roger D Kouyos; Sarah P Otto; Sebastian Bonhoeffer
Journal:  Genetics       Date:  2006-03-17       Impact factor: 4.562

9.  The accumulation of deleterious genes in a population--Muller's Ratchet.

Authors:  J Haigh
Journal:  Theor Popul Biol       Date:  1978-10       Impact factor: 1.570

10.  Analysis of epistatic interactions and fitness landscapes using a new geometric approach.

Authors:  Niko Beerenwinkel; Lior Pachter; Bernd Sturmfels; Santiago F Elena; Richard E Lenski
Journal:  BMC Evol Biol       Date:  2007-04-13       Impact factor: 3.260

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  29 in total

1.  Introduction to focus issue: genetic interactions.

Authors:  Daniel Segrè; Christopher J Marx
Journal:  Chaos       Date:  2010-06       Impact factor: 3.642

2.  Selection for chaperone-like mediated genetic robustness at low mutation rate: impact of drift, epistasis and complexity.

Authors:  Pierre-Alexis Gros; Olivier Tenaillon
Journal:  Genetics       Date:  2009-03-23       Impact factor: 4.562

3.  Nonlinear fitness landscape of a molecular pathway.

Authors:  Lilia Perfeito; Stéphane Ghozzi; Johannes Berg; Karin Schnetz; Michael Lässig
Journal:  PLoS Genet       Date:  2011-07-21       Impact factor: 5.917

4.  The distribution of epistasis on simple fitness landscapes.

Authors:  Christelle Fraïsse; John J Welch
Journal:  Biol Lett       Date:  2019-04-26       Impact factor: 3.703

5.  Genotypic Complexity of Fisher's Geometric Model.

Authors:  Sungmin Hwang; Su-Chan Park; Joachim Krug
Journal:  Genetics       Date:  2017-04-26       Impact factor: 4.562

6.  Accelerated simulation of evolutionary trajectories in origin-fixation models.

Authors:  Ashley I Teufel; Claus O Wilke
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

7.  Gene functional trade-offs and the evolution of pleiotropy.

Authors:  Frédéric Guillaume; Sarah P Otto
Journal:  Genetics       Date:  2012-09-14       Impact factor: 4.562

Review 8.  The causes of epistasis.

Authors:  J Arjan G M de Visser; Tim F Cooper; Santiago F Elena
Journal:  Proc Biol Sci       Date:  2011-10-05       Impact factor: 5.349

9.  Properties of selected mutations and genotypic landscapes under Fisher's geometric model.

Authors:  François Blanquart; Guillaume Achaz; Thomas Bataillon; Olivier Tenaillon
Journal:  Evolution       Date:  2014-11-17       Impact factor: 3.694

10.  The Utility of Fisher's Geometric Model in Evolutionary Genetics.

Authors:  O Tenaillon
Journal:  Annu Rev Ecol Evol Syst       Date:  2014-11-01       Impact factor: 13.915

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