Literature DB >> 20590330

Introduction to focus issue: genetic interactions.

Daniel Segrè1, Christopher J Marx.   

Abstract

The perturbation of a gene in an organism's genome often causes changes in the organism's observable properties or phenotypes. It is not obvious a priori whether the simultaneous perturbation of two genes produces a phenotypic change that is easily predictable from the changes caused by individual perturbations. In fact, this is often not the case: the nonlinearity and interdependence between genetic variants in determining phenotypes, also known as epistasis, is a prevalent phenomenon in biological systems. This focus issue presents recent developments in the study of epistasis and genetic interactions, emphasizing the broad implications of this phenomenon in evolutionary biology, functional genomics, and human diseases. (c) 2010 American Institute of Physics.

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Year:  2010        PMID: 20590330      PMCID: PMC2909308          DOI: 10.1063/1.3456057

Source DB:  PubMed          Journal:  Chaos        ISSN: 1054-1500            Impact factor:   3.642


  53 in total

Review 1.  A systems-biology approach to modular genetic complexity.

Authors:  Gregory W Carter; Cynthia G Rush; Filiz Uygun; Nikita A Sakhanenko; David J Galas; Timothy Galitski
Journal:  Chaos       Date:  2010-06       Impact factor: 3.642

2.  Traversing the conceptual divide between biological and statistical epistasis: systems biology and a more modern synthesis.

Authors:  Jason H Moore; Scott M Williams
Journal:  Bioessays       Date:  2005-06       Impact factor: 4.345

3.  Darwinian evolution can follow only very few mutational paths to fitter proteins.

Authors:  Daniel M Weinreich; Nigel F Delaney; Mark A Depristo; Daniel L Hartl
Journal:  Science       Date:  2006-04-07       Impact factor: 47.728

4.  Functional classification of drugs by properties of their pairwise interactions.

Authors:  Pamela Yeh; Ariane I Tschumi; Roy Kishony
Journal:  Nat Genet       Date:  2006-03-19       Impact factor: 38.330

5.  Genetic architecture of complex traits: large phenotypic effects and pervasive epistasis.

Authors:  Haifeng Shao; Lindsay C Burrage; David S Sinasac; Annie E Hill; Sheila R Ernest; William O'Brien; Hayden-William Courtland; Karl J Jepsen; Andrew Kirby; E J Kulbokas; Mark J Daly; Karl W Broman; Eric S Lander; Joseph H Nadeau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-09       Impact factor: 11.205

6.  Exposing the fitness contribution of duplicated genes.

Authors:  Alexander DeLuna; Kalin Vetsigian; Noam Shoresh; Matthew Hegreness; Maritrini Colón-González; Sharon Chao; Roy Kishony
Journal:  Nat Genet       Date:  2008-04-13       Impact factor: 38.330

7.  The dynamics of adaptation on correlated fitness landscapes.

Authors:  Sergey Kryazhimskiy; Gasper Tkacik; Joshua B Plotkin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-26       Impact factor: 11.205

Review 8.  Chemical-genetic approaches for exploring the mode of action of natural products.

Authors:  Andres Lopez; Ainslie B Parsons; Corey Nislow; Guri Giaever; Charles Boone
Journal:  Prog Drug Res       Date:  2008

9.  A comprehensive strategy enabling high-resolution functional analysis of the yeast genome.

Authors:  David K Breslow; Dale M Cameron; Sean R Collins; Maya Schuldiner; Jacob Stewart-Ornstein; Heather W Newman; Sigurd Braun; Hiten D Madhani; Nevan J Krogan; Jonathan S Weissman
Journal:  Nat Methods       Date:  2008-07-11       Impact factor: 28.547

10.  Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli.

Authors:  Tim F Cooper; Susanna K Remold; Richard E Lenski; Dominique Schneider
Journal:  PLoS Genet       Date:  2008-02       Impact factor: 5.917

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  1 in total

Review 1.  Experimental evolution of protein-protein interaction networks.

Authors:  Betül Kaçar; Eric A Gaucher
Journal:  Biochem J       Date:  2013-08-01       Impact factor: 3.857

  1 in total

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