Literature DB >> 19087953

Statistical mechanics and the evolution of polygenic quantitative traits.

N H Barton1, H P de Vladar.   

Abstract

The evolution of quantitative characters depends on the frequencies of the alleles involved, yet these frequencies cannot usually be measured. Previous groups have proposed an approximation to the dynamics of quantitative traits, based on an analogy with statistical mechanics. We present a modified version of that approach, which makes the analogy more precise and applies quite generally to describe the evolution of allele frequencies. We calculate explicitly how the macroscopic quantities (i.e., quantities that depend on the quantitative trait) depend on evolutionary forces, in a way that is independent of the microscopic details. We first show that the stationary distribution of allele frequencies under drift, selection, and mutation maximizes a certain measure of entropy, subject to constraints on the expectation of observable quantities. We then approximate the dynamical changes in these expectations, assuming that the distribution of allele frequencies always maximizes entropy, conditional on the expected values. When applied to directional selection on an additive trait, this gives a very good approximation to the evolution of the trait mean and the genetic variance, when the number of mutations per generation is sufficiently high (4Nmicro > 1). We show how the method can be modified for small mutation rates (4Nmicro --> 0). We outline how this method describes epistatic interactions as, for example, with stabilizing selection.

Mesh:

Year:  2008        PMID: 19087953      PMCID: PMC2651070          DOI: 10.1534/genetics.108.099309

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  28 in total

Review 1.  Understanding quantitative genetic variation.

Authors:  N H Barton; P D Keightley
Journal:  Nat Rev Genet       Date:  2002-01       Impact factor: 53.242

2.  Cumulant dynamics of a population under multiplicative selection, mutation, and drift.

Authors:  M Rattray; J L Shapiro
Journal:  Theor Popul Biol       Date:  2001-08       Impact factor: 1.570

3.  The evolution of recombination in a heterogeneous environment.

Authors:  T Lenormand; S P Otto
Journal:  Genetics       Date:  2000-09       Impact factor: 4.562

Review 4.  General models of multilocus evolution.

Authors:  Mark Kirkpatrick; Toby Johnson; Nick Barton
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

5.  Natural and sexual selection on many loci.

Authors:  N H Barton; M Turelli
Journal:  Genetics       Date:  1991-01       Impact factor: 4.562

6.  Modelling evolving populations.

Authors:  A Prügel-Bennett
Journal:  J Theor Biol       Date:  1997-03-07       Impact factor: 2.691

7.  A stochastic model concerning the maintenance of genetic variability in quantitative characters.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1965-09       Impact factor: 11.205

8.  Genetic and statistical analyses of strong selection on polygenic traits: what, me normal?

Authors:  M Turelli; N H Barton
Journal:  Genetics       Date:  1994-11       Impact factor: 4.562

9.  Heritable genetic variation via mutation-selection balance: Lerch's zeta meets the abdominal bristle.

Authors:  M Turelli
Journal:  Theor Popul Biol       Date:  1984-04       Impact factor: 1.570

10.  Assessing the evolutionary impact of amino acid mutations in the human genome.

Authors:  Adam R Boyko; Scott H Williamson; Amit R Indap; Jeremiah D Degenhardt; Ryan D Hernandez; Kirk E Lohmueller; Mark D Adams; Steffen Schmidt; John J Sninsky; Shamil R Sunyaev; Thomas J White; Rasmus Nielsen; Andrew G Clark; Carlos D Bustamante
Journal:  PLoS Genet       Date:  2008-05-30       Impact factor: 5.917

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  17 in total

1.  A test for selection employing quantitative trait locus and mutation accumulation data.

Authors:  Daniel P Rice; Jeffrey P Townsend
Journal:  Genetics       Date:  2012-01-31       Impact factor: 4.562

Review 2.  On epistasis: why it is unimportant in polygenic directional selection.

Authors:  James F Crow
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

3.  The statistical mechanics of a polygenic character under stabilizing selection, mutation and drift.

Authors:  Harold P de Vladar; Nick H Barton
Journal:  J R Soc Interface       Date:  2010-11-17       Impact factor: 4.118

4.  Are there ergodic limits to evolution? Ergodic exploration of genome space and convergence.

Authors:  Tom C B McLeish
Journal:  Interface Focus       Date:  2015-12-06       Impact factor: 3.906

Review 5.  Additive genetic variability and the Bayesian alphabet.

Authors:  Daniel Gianola; Gustavo de los Campos; William G Hill; Eduardo Manfredi; Rohan Fernando
Journal:  Genetics       Date:  2009-07-20       Impact factor: 4.562

6.  Multiple-Line Inference of Selection on Quantitative Traits.

Authors:  Nico Riedel; Bhavin S Khatri; Michael Lässig; Johannes Berg
Journal:  Genetics       Date:  2015-07-02       Impact factor: 4.562

7.  Rapid Adaptation of a Polygenic Trait After a Sudden Environmental Shift.

Authors:  Kavita Jain; Wolfgang Stephan
Journal:  Genetics       Date:  2017-03-24       Impact factor: 4.562

8.  Detecting Polygenic Adaptation in Admixture Graphs.

Authors:  Fernando Racimo; Jeremy J Berg; Joseph K Pickrell
Journal:  Genetics       Date:  2018-01-18       Impact factor: 4.562

9.  How does epistasis influence the response to selection?

Authors:  N H Barton
Journal:  Heredity (Edinb)       Date:  2016-11-30       Impact factor: 3.821

10.  Understanding and using quantitative genetic variation.

Authors:  William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-01-12       Impact factor: 6.237

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