Literature DB >> 21084341

The statistical mechanics of a polygenic character under stabilizing selection, mutation and drift.

Harold P de Vladar1, Nick H Barton.   

Abstract

By exploiting an analogy between population genetics and statistical mechanics, we study the evolution of a polygenic trait under stabilizing selection, mutation and genetic drift. This requires us to track only four macroscopic variables, instead of the distribution of all the allele frequencies that influence the trait. These macroscopic variables are the expectations of: the trait mean and its square, the genetic variance, and of a measure of heterozygosity, and are derived from a generating function that is in turn derived by maximizing an entropy measure. These four macroscopics are enough to accurately describe the dynamics of the trait mean and of its genetic variance (and in principle of any other quantity). Unlike previous approaches that were based on an infinite series of moments or cumulants, which had to be truncated arbitrarily, our calculations provide a well-defined approximation procedure. We apply the framework to abrupt and gradual changes in the optimum, as well as to changes in the strength of stabilizing selection. Our approximations are surprisingly accurate, even for systems with as few as five loci. We find that when the effects of drift are included, the expected genetic variance is hardly altered by directional selection, even though it fluctuates in any particular instance. We also find hysteresis, showing that even after averaging over the microscopic variables, the macroscopic trajectories retain a memory of the underlying genetic states.

Mesh:

Year:  2010        PMID: 21084341      PMCID: PMC3061091          DOI: 10.1098/rsif.2010.0438

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  41 in total

1.  Evolving populations with overlapping generations.

Authors:  A Rogers; A Prügel-Bennett
Journal:  Theor Popul Biol       Date:  2000-03       Impact factor: 1.570

2.  Adaptation and the cost of complexity.

Authors:  H A Orr
Journal:  Evolution       Date:  2000-02       Impact factor: 3.694

3.  Environmental stress, inbreeding, and the nature of phenotypic and genetic variance in Drosophila melanogaster.

Authors:  Kevin Fowler; Michael C Whitlock
Journal:  Proc Biol Sci       Date:  2002-04-07       Impact factor: 5.349

Review 4.  Understanding quantitative genetic variation.

Authors:  N H Barton; P D Keightley
Journal:  Nat Rev Genet       Date:  2002-01       Impact factor: 53.242

5.  Cumulant dynamics of a population under multiplicative selection, mutation, and drift.

Authors:  M Rattray; J L Shapiro
Journal:  Theor Popul Biol       Date:  2001-08       Impact factor: 1.570

6.  Heritable variation and evolution under favourable and unfavourable conditions.

Authors: 
Journal:  Trends Ecol Evol       Date:  1999-03       Impact factor: 17.712

7.  Deleterious mutations, apparent stabilizing selection and the maintenance of quantitative variation.

Authors:  A S Kondrashov; M Turelli
Journal:  Genetics       Date:  1992-10       Impact factor: 4.562

8.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

9.  Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in a evolution reactor, I.

Authors:  Takuyo Aita; Shunichi Morinaga; Yuzuru Husimi
Journal:  Bull Math Biol       Date:  2004-09       Impact factor: 1.758

10.  Analysis of genetic algorithms using statistical mechanics.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-02-28       Impact factor: 9.161

View more
  7 in total

1.  Adaptive fixation in two-locus models of stabilizing selection and genetic drift.

Authors:  Andreas Wollstein; Wolfgang Stephan
Journal:  Genetics       Date:  2014-08-04       Impact factor: 4.562

2.  Exponential Families with External Parameters.

Authors:  Marco Favretti
Journal:  Entropy (Basel)       Date:  2022-05-14       Impact factor: 2.738

3.  A General Approximation for the Dynamics of Quantitative Traits.

Authors:  Katarína Bod'ová; Gašper Tkačik; Nicholas H Barton
Journal:  Genetics       Date:  2016-02-17       Impact factor: 4.562

4.  Stability and response of polygenic traits to stabilizing selection and mutation.

Authors:  Harold P de Vladar; Nick Barton
Journal:  Genetics       Date:  2014-04-07       Impact factor: 4.562

5.  Breeding novel solutions in the brain: a model of Darwinian neurodynamics.

Authors:  András Szilágyi; István Zachar; Anna Fedor; Harold P de Vladar; Eörs Szathmáry
Journal:  F1000Res       Date:  2016-09-28

6.  A Genomic Map of the Effects of Linked Selection in Drosophila.

Authors:  Eyal Elyashiv; Shmuel Sattath; Tina T Hu; Alon Strutsovsky; Graham McVicker; Peter Andolfatto; Graham Coop; Guy Sella
Journal:  PLoS Genet       Date:  2016-08-18       Impact factor: 5.917

7.  Dynamic maximum entropy provides accurate approximation of structured population dynamics.

Authors:  Katarína Bod'ová; Enikő Szép; Nicholas H Barton
Journal:  PLoS Comput Biol       Date:  2021-12-01       Impact factor: 4.475

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.