Literature DB >> 17633714

Probabilistic clustering and quantitative analysis of white matter fiber tracts.

Mahnaz Maddah1, William M Wells, Simon K Warfield, Carl-Fredrik Westin, W Eric L Grimson.   

Abstract

A novel framework for joint clustering and point-by-point mapping of white matter fiber pathways is presented. Accurate clustering of the trajectories into fiber bundles requires point correspondence determined along the fiber pathways. This knowledge is also crucial for any tract-oriented quantitative analysis. We employ an expectation-maximization (EM) algorithm to cluster the trajectories in a Gamma mixture model context. The result of clustering is the probabilistic assignment of the fiber trajectories to each cluster, an estimate of the cluster parameters, and point correspondences along the trajectories. Point-by-point correspondence of the trajectories within a bundle is obtained by constructing a distance map and a label map from each cluster center at every iteration of the EM algorithm. This offers a time-efficient alternative to pairwise curve matching of all trajectories with respect to each cluster center. Probabilistic assignment of the trajectories to clusters is controlled by imposing a minimum threshold on the membership probabilities, to remove outliers in a principled way. The presented results confirm the efficiency and effectiveness of the proposed framework for quantitative analysis of diffusion tensor MRI.

Mesh:

Year:  2007        PMID: 17633714      PMCID: PMC3266067          DOI: 10.1007/978-3-540-73273-0_31

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  11 in total

1.  In vivo fiber tractography using DT-MRI data.

Authors:  P J Basser; S Pajevic; C Pierpaoli; J Duda; A Aldroubi
Journal:  Magn Reson Med       Date:  2000-10       Impact factor: 4.668

2.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

3.  Spatial normalization of diffusion tensor MRI using multiple channels.

Authors:  Hae-Jeong Park; Marek Kubicki; Martha E Shenton; Alexandre Guimond; Robert W McCarley; Stephan E Maier; Ron Kikinis; Ferenc A Jolesz; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2003-12       Impact factor: 6.556

4.  White matter tract clustering and correspondence in populations.

Authors:  Lauren O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  Analysis of brain white matter via fiber tract modeling.

Authors:  Guido Gerig; Sylvain Gouttard; Isabelle Corouge
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

6.  Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.

Authors:  Isabelle Corouge; P Thomas Fletcher; Sarang Joshi; Sylvain Gouttard; Guido Gerig
Journal:  Med Image Anal       Date:  2006-08-22       Impact factor: 8.545

7.  Quantification of the shape of fiber tracts.

Authors:  P G Batchelor; F Calamante; J-D Tournier; D Atkinson; D L G Hill; A Connelly
Journal:  Magn Reson Med       Date:  2006-04       Impact factor: 4.668

8.  Clustering Fiber Traces Using Normalized Cuts.

Authors:  Anders Brun; Hans Knutsson; Hae-Jeong Park; Martha E Shenton; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2004-09-02

9.  Quantitative diffusion tensor MRI fiber tractography of sensorimotor white matter development in premature infants.

Authors:  Jeffrey I Berman; Pratik Mukherjee; Savannah C Partridge; Steven P Miller; Donna M Ferriero; A James Barkovich; Daniel B Vigneron; Roland G Henry
Journal:  Neuroimage       Date:  2005-10-01       Impact factor: 6.556

Review 10.  Diffusion tensor magnetic resonance imaging in multiple sclerosis.

Authors:  Daniel Goldberg-Zimring; Andrea U J Mewes; Mahnaz Maddah; Simon K Warfield
Journal:  J Neuroimaging       Date:  2005       Impact factor: 2.486

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  12 in total

1.  A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis.

Authors:  Mahnaz Maddah; Lilla Zöllei; W Eric L Grimson; Carl-Fredrik Westin; William M Wells
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2008

2.  Structure-specific statistical mapping of white matter tracts.

Authors:  Paul A Yushkevich; Hui Zhang; Tony J Simon; James C Gee
Journal:  Neuroimage       Date:  2008-01-26       Impact factor: 6.556

3.  Extracting tractosemas from a displacement probability field for tractography in DW-MRI.

Authors:  Angelos Barmpoutis; Baba C Vemuri; Dena Howland; John R Forder
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

4.  Direct segmentation of the major white matter tracts in diffusion tensor images.

Authors:  Pierre-Louis Bazin; Chuyang Ye; John A Bogovic; Navid Shiee; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2011-06-21       Impact factor: 6.556

5.  System for integrated neuroimaging analysis and processing of structure.

Authors:  Bennett A Landman; John A Bogovic; Aaron Carass; Min Chen; Snehashis Roy; Navid Shiee; Zhen Yang; Bhaskar Kishore; Dzung Pham; Pierre-Louis Bazin; Susan M Resnick; Jerry L Prince
Journal:  Neuroinformatics       Date:  2013-01

6.  Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI.

Authors:  Ulas Ziyan; Mert R Sabuncu; W Eric L Grimson; Carl-Fredrik Westin
Journal:  Int J Comput Vis       Date:  2009       Impact factor: 7.410

7.  Modeling of Anatomical Information in Clustering of White Matter Fiber Trajectories Using Dirichlet Distribution.

Authors:  Mahnaz Maddah; Lilla Zöllei; W Eric L Grimson; William M Wells
Journal:  Proc Workshop Math Methods Biomed Image Analysis       Date:  2008-07-15

8.  White matter disease contributes to apathy and disinhibition in behavioral variant frontotemporal dementia.

Authors:  John P Powers; Lauren Massimo; Corey T McMillan; Paul A Yushkevich; Hui Zhang; James C Gee; Murray Grossman
Journal:  Cogn Behav Neurol       Date:  2014-12       Impact factor: 1.600

9.  Application of neuroanatomical features to tractography clustering.

Authors:  Qian Wang; Pew-Thian Yap; Guorong Wu; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2012-03-28       Impact factor: 5.038

10.  Identifying white-matter fiber bundles in DTI data using an automated proximity-based fiber-clustering method.

Authors:  Song Zhang; Stephen Correia; David H Laidlaw
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Sep-Oct       Impact factor: 4.579

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