Literature DB >> 22461221

Application of neuroanatomical features to tractography clustering.

Qian Wang1, Pew-Thian Yap, Guorong Wu, Dinggang Shen.   

Abstract

Diffusion tensor imaging allows unprecedented insight into brain neural connectivity in vivo by allowing reconstruction of neuronal tracts via captured patterns of water diffusion in white matter microstructures. However, tractography algorithms often output hundreds of thousands of fibers, rendering subsequent data analysis intractable. As a remedy, fiber clustering techniques are able to group fibers into dozens of bundles and thus facilitate analyses. Most existing fiber clustering methods rely on geometrical information of fibers, by viewing them as curves in 3D Euclidean space. The important neuroanatomical aspect of fibers, however, is ignored. In this article, the neuroanatomical information of each fiber is encapsulated in the associativity vector, which functions as the unique "fingerprint" of the fiber. Specifically, each entry in the associativity vector describes the relationship between the fiber and a certain anatomical ROI in a fuzzy manner. The value of the entry approaches 1 if the fiber is spatially related to the ROI at high confidence; on the contrary, the value drops closer to 0. The confidence of the ROI is calculated by diffusing the ROI according to the underlying fibers from tractography. In particular, we have adopted the fast marching method for simulation of ROI diffusion. Using the associativity vectors of fibers, we further model fibers as observations sampled from multivariate Gaussian mixtures in the feature space. To group all fibers into relevant major bundles, an expectation-maximization clustering approach is employed. Experimental results indicate that our method results in anatomically meaningful bundles that are highly consistent across subjects.
Copyright © 2012 Wiley Periodicals, Inc., a Wiley company.

Entities:  

Keywords:  associativity vector; fast marching; fiber clustering

Mesh:

Year:  2012        PMID: 22461221      PMCID: PMC4154701          DOI: 10.1002/hbm.22051

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  28 in total

Review 1.  Fiber tracking: principles and strategies - a technical review.

Authors:  Susumu Mori; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

2.  A method for obtaining tract-specific diffusion tensor MRI measurements in the presence of disease: application to patients with clinically isolated syndromes suggestive of multiple sclerosis.

Authors:  E Pagani; M Filippi; M A Rocca; M A Horsfield
Journal:  Neuroimage       Date:  2005-02-25       Impact factor: 6.556

3.  Topography of the human corpus callosum revisited--comprehensive fiber tractography using diffusion tensor magnetic resonance imaging.

Authors:  Sabine Hofer; Jens Frahm
Journal:  Neuroimage       Date:  2006-07-18       Impact factor: 6.556

4.  Knowledge-based classification of neuronal fibers in entire brain.

Authors:  Yan Xia; U Turken; Susan L Whitfield-Gabrieli; John D Gabrieli
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  White matter tract clustering and correspondence in populations.

Authors:  Lauren O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

6.  Analysis of brain white matter via fiber tract modeling.

Authors:  Guido Gerig; Sylvain Gouttard; Isabelle Corouge
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

7.  Diffusion tensor tractography-based group mapping of the pyramidal tract in relapsing-remitting multiple sclerosis patients.

Authors:  F Lin; C Yu; T Jiang; K Li; P Chan
Journal:  AJNR Am J Neuroradiol       Date:  2007-02       Impact factor: 3.825

8.  Diffusion tensor magnetic resonance imaging in multiple sclerosis.

Authors:  M Filippi; M Cercignani; M Inglese; M A Horsfield; G Comi
Journal:  Neurology       Date:  2001-02-13       Impact factor: 9.910

9.  Estimating distributed anatomical connectivity using fast marching methods and diffusion tensor imaging.

Authors:  Geoffrey J M Parker; Claudia A M Wheeler-Kingshott; Gareth J Barker
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

10.  Initial demonstration of in vivo tracing of axonal projections in the macaque brain and comparison with the human brain using diffusion tensor imaging and fast marching tractography.

Authors:  Geoffrey J M Parker; Klaas E Stephan; Gareth J Barker; James B Rowe; David G MacManus; Claudia A M Wheeler-Kingshott; Olga Ciccarelli; Richard E Passingham; Rachel L Spinks; Roger N Lemon; Robert Turner
Journal:  Neuroimage       Date:  2002-04       Impact factor: 6.556

View more
  15 in total

1.  TRActs constrained by UnderLying INfant anatomy (TRACULInA): An automated probabilistic tractography tool with anatomical priors for use in the newborn brain.

Authors:  Lilla Zöllei; Camilo Jaimes; Elie Saliba; P Ellen Grant; Anastasia Yendiki
Journal:  Neuroimage       Date:  2019-05-24       Impact factor: 6.556

2.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Laura Rigolo; Yogesh Rathi; Nikos Makris; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

3.  Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics.

Authors:  Yan Jin; Yonggang Shi; Liang Zhan; Boris A Gutman; Greig I de Zubicaray; Katie L McMahon; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2014-05-09       Impact factor: 6.556

4.  A robust variational approach for simultaneous smoothing and estimation of DTI.

Authors:  Meizhu Liu; Baba C Vemuri; Rachid Deriche
Journal:  Neuroimage       Date:  2012-11-17       Impact factor: 6.556

5.  Spatial transformation of DWI data using non-negative sparse representation.

Authors:  Pew-Thian Yap; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2012-06-13       Impact factor: 10.048

6.  Uncertainty estimation in diffusion MRI using the nonlocal bootstrap.

Authors:  Pew-Thian Yap; Hongyu An; Yasheng Chen; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2014-04-29       Impact factor: 10.048

7.  Diffusion tensor image registration using hybrid connectivity and tensor features.

Authors:  Qian Wang; Pew-Thian Yap; Guorong Wu; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2013-11-30       Impact factor: 5.038

8.  Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI.

Authors:  Jian Cheng; Rachid Deriche; Tianzi Jiang; Dinggang Shen; Pew-Thian Yap
Journal:  Neuroimage       Date:  2014-08-07       Impact factor: 6.556

9.  Fiber clustering versus the parcellation-based connectome.

Authors:  Lauren J O'Donnell; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

10.  AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity.

Authors:  Viviana Siless; Ken Chang; Bruce Fischl; Anastasia Yendiki
Journal:  Neuroimage       Date:  2017-11-01       Impact factor: 6.556

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.