Literature DB >> 19212449

A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis.

Mahnaz Maddah1, Lilla Zöllei, W Eric L Grimson, Carl-Fredrik Westin, William M Wells.   

Abstract

We propose a Bayesian approach to incorporate anatomical information in the clustering of fiber trajectories. An expectation-maximization (EM) algorithm is used to cluster the trajectories, in which an atlas serves as the prior on the labels. The atlas guides the clustering algorithm and makes the resulting bundles anatomically meaningful. In addition, it provides the seed points for the tractography and initial settings of the EM algorithm. The proposed approach provides a robust and automated tool for tract-oriented analysis both in a single subject and over a population.

Year:  2008        PMID: 19212449      PMCID: PMC2638065          DOI: 10.1109/ISBI.2008.4540943

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  12 in total

1.  In vivo fiber tractography using DT-MRI data.

Authors:  P J Basser; S Pajevic; C Pierpaoli; J Duda; A Aldroubi
Journal:  Magn Reson Med       Date:  2000-10       Impact factor: 4.668

2.  Fiber tract-based atlas of human white matter anatomy.

Authors:  Setsu Wakana; Hangyi Jiang; Lidia M Nagae-Poetscher; Peter C M van Zijl; Susumu Mori
Journal:  Radiology       Date:  2003-11-26       Impact factor: 11.105

3.  Automated atlas-based clustering of white matter fiber tracts from DTMRI.

Authors:  Mahnaz Maddah; Andrea U J Mewes; Steven Haker; W Eric L Grimson; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

4.  White matter tract clustering and correspondence in populations.

Authors:  Lauren O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.

Authors:  Isabelle Corouge; P Thomas Fletcher; Sarang Joshi; Sylvain Gouttard; Guido Gerig
Journal:  Med Image Anal       Date:  2006-08-22       Impact factor: 8.545

6.  A probabilistic model-based approach to consistent white matter tract segmentation.

Authors:  Jonathan D Clayden; Amos J Storkey; Mark E Bastin
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

7.  Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification.

Authors:  Kegang Hua; Jiangyang Zhang; Setsu Wakana; Hangyi Jiang; Xin Li; Daniel S Reich; Peter A Calabresi; James J Pekar; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2007-08-15       Impact factor: 6.556

8.  A unified framework for clustering and quantitative analysis of white matter fiber tracts.

Authors:  Mahnaz Maddah; W Eric L Grimson; Simon K Warfield; William M Wells
Journal:  Med Image Anal       Date:  2007-10-25       Impact factor: 8.545

9.  Multi-modal volume registration by maximization of mutual information.

Authors:  W M Wells; P Viola; H Atsumi; S Nakajima; R Kikinis
Journal:  Med Image Anal       Date:  1996-03       Impact factor: 8.545

10.  Clustering Fiber Traces Using Normalized Cuts.

Authors:  Anders Brun; Hans Knutsson; Hae-Jeong Park; Martha E Shenton; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2004-09-02
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  9 in total

1.  Direct segmentation of the major white matter tracts in diffusion tensor images.

Authors:  Pierre-Louis Bazin; Chuyang Ye; John A Bogovic; Navid Shiee; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2011-06-21       Impact factor: 6.556

2.  System for integrated neuroimaging analysis and processing of structure.

Authors:  Bennett A Landman; John A Bogovic; Aaron Carass; Min Chen; Snehashis Roy; Navid Shiee; Zhen Yang; Bhaskar Kishore; Dzung Pham; Pierre-Louis Bazin; Susan M Resnick; Jerry L Prince
Journal:  Neuroinformatics       Date:  2013-01

3.  Mapping the human connectome.

Authors:  Arthur W Toga; Kristi A Clark; Paul M Thompson; David W Shattuck; John Darrell Van Horn
Journal:  Neurosurgery       Date:  2012-07       Impact factor: 4.654

4.  Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Authors:  Ralph O Suarez; Olivier Commowick; Sanjay P Prabhu; Simon K Warfield
Journal:  Neuroimage       Date:  2011-11-27       Impact factor: 6.556

5.  Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases.

Authors:  Yan Jin; Yonggang Shi; Liang Zhan; Junning Li; Greig I de Zubicaray; Katie L McMahon; Nicholas G Martin; Margaret J Wright; Paul M Thompson
Journal:  Multimodal Brain Image Anal (2012)       Date:  2012-01-01

6.  Unsupervised white matter fiber clustering and tract probability map generation: applications of a Gaussian process framework for white matter fibers.

Authors:  D Wassermann; L Bloy; E Kanterakis; R Verma; R Deriche
Journal:  Neuroimage       Date:  2010-01-14       Impact factor: 6.556

7.  AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity.

Authors:  Viviana Siless; Ken Chang; Bruce Fischl; Anastasia Yendiki
Journal:  Neuroimage       Date:  2017-11-01       Impact factor: 6.556

8.  White Matter Tract Segmentation as Multiple Linear Assignment Problems.

Authors:  Nusrat Sharmin; Emanuele Olivetti; Paolo Avesani
Journal:  Front Neurosci       Date:  2018-02-06       Impact factor: 4.677

9.  QuickBundles, a Method for Tractography Simplification.

Authors:  Eleftherios Garyfallidis; Matthew Brett; Marta Morgado Correia; Guy B Williams; Ian Nimmo-Smith
Journal:  Front Neurosci       Date:  2012-12-11       Impact factor: 4.677

  9 in total

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