Literature DB >> 20442792

Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI.

Ulas Ziyan1, Mert R Sabuncu, W Eric L Grimson, Carl-Fredrik Westin.   

Abstract

We propose an integrated registration and clustering algorithm, called "consistency clustering", that automatically constructs a probabilistic white-matter atlas from a set of multi-subject diffusion weighted MR images. We formulate the atlas creation as a maximum likelihood problem which the proposed method solves using a generalized Expectation Maximization (EM) framework. Additionally, the algorithm employs an outlier rejection and denoising strategy to produce sharp probabilistic maps of certain bundles of interest. We test this algorithm on synthetic and real data, and evaluate its stability against initialization. We demonstrate labeling a novel subject using the resulting spatial atlas and evaluate the accuracy of this labeling. Consistency clustering is a viable tool for completely automatic white-matter atlas construction for sub-populations and the resulting atlas is potentially useful for making diffusion measurements in a common coordinate system to identify pathology related changes or developmental trends.

Entities:  

Year:  2009        PMID: 20442792      PMCID: PMC2862392          DOI: 10.1007/s11263-009-0217-1

Source DB:  PubMed          Journal:  Int J Comput Vis        ISSN: 0920-5691            Impact factor:   7.410


  27 in total

1.  Age-related decline in brain white matter anisotropy measured with spatially corrected echo-planar diffusion tensor imaging.

Authors:  A Pfefferbaum; E V Sullivan; M Hedehus; K O Lim; E Adalsteinsson; M Moseley
Journal:  Magn Reson Med       Date:  2000-08       Impact factor: 4.668

Review 2.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

3.  Automatic segmentation of thalamic nuclei from diffusion tensor magnetic resonance imaging.

Authors:  Mette R Wiegell; David S Tuch; Henrik B W Larsson; Van J Wedeen
Journal:  Neuroimage       Date:  2003-06       Impact factor: 6.556

4.  DTI segmentation using an information theoretic tensor dissimilarity measure.

Authors:  Zhizhou Wang; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2005-10       Impact factor: 10.048

5.  Knowledge-based classification of neuronal fibers in entire brain.

Authors:  Yan Xia; U Turken; Susan L Whitfield-Gabrieli; John D Gabrieli
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

6.  White matter tract clustering and correspondence in populations.

Authors:  Lauren O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

7.  Analysis of brain white matter via fiber tract modeling.

Authors:  Guido Gerig; Sylvain Gouttard; Isabelle Corouge
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

8.  Nonlinear registration of diffusion MR images based on fiber bundles.

Authors:  Ulas Ziyan; Mert R Sabuncu; Lauren J O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

9.  Toward a quantitative assessment of diffusion anisotropy.

Authors:  C Pierpaoli; P J Basser
Journal:  Magn Reson Med       Date:  1996-12       Impact factor: 4.668

10.  Between session reproducibility and between subject variability of diffusion MR and tractography measures.

Authors:  E Heiervang; T E J Behrens; C E Mackay; M D Robson; H Johansen-Berg
Journal:  Neuroimage       Date:  2006-09-26       Impact factor: 6.556

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  15 in total

1.  Globally optimized fiber tracking and hierarchical clustering -- a unified framework.

Authors:  Xi Wu; Mingyuan Xie; Jiliu Zhou; Adam W Anderson; John C Gore; Zhaohua Ding
Journal:  Magn Reson Imaging       Date:  2012-01-27       Impact factor: 2.546

2.  Direct segmentation of the major white matter tracts in diffusion tensor images.

Authors:  Pierre-Louis Bazin; Chuyang Ye; John A Bogovic; Navid Shiee; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2011-06-21       Impact factor: 6.556

3.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Laura Rigolo; Yogesh Rathi; Nikos Makris; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

4.  Unbiased groupwise registration of white matter tractography.

Authors:  Lauren J O'Donnell; William M Wells; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

Review 5.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

6.  Creation of a novel trigeminal tractography atlas for automated trigeminal nerve identification.

Authors:  Fan Zhang; Guoqiang Xie; Laura Leung; Michael A Mooney; Lorenz Epprecht; Isaiah Norton; Yogesh Rathi; Ron Kikinis; Ossama Al-Mefty; Nikos Makris; Alexandra J Golby; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2020-06-20       Impact factor: 6.556

7.  Mapping population-based structural connectomes.

Authors:  Zhengwu Zhang; Maxime Descoteaux; Jingwen Zhang; Gabriel Girard; Maxime Chamberland; David Dunson; Anuj Srivastava; Hongtu Zhu
Journal:  Neuroimage       Date:  2018-02-03       Impact factor: 6.556

8.  Test-retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Hum Brain Mapp       Date:  2019-03-15       Impact factor: 5.038

9.  Fiber clustering versus the parcellation-based connectome.

Authors:  Lauren J O'Donnell; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

10.  AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity.

Authors:  Viviana Siless; Ken Chang; Bruce Fischl; Anastasia Yendiki
Journal:  Neuroimage       Date:  2017-11-01       Impact factor: 6.556

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