Literature DB >> 18599916

Identifying white-matter fiber bundles in DTI data using an automated proximity-based fiber-clustering method.

Song Zhang1, Stephen Correia, David H Laidlaw.   

Abstract

We present a method for clustering diffusion tensor imaging (DTI) integral curves into anatomically plausible bundles. An expert rater evaluated the anatomical accuracy of the bundles. We also evaluated the method by applying an experimental cross-subject labeling method to the clustering results. We first employ a sampling and culling strategy for generating DTI integral curves and then constrain the curves so that they terminate in gray matter. We then employ a clustering method based on a proximity measure calculated between every pair of curves. We interactively selected a proximity threshold to achieve visually optimal clustering in models from four DTI datasets. An expert rater then assigned a confidence rating about bundle presence and accuracy for each of 12 target fiber bundles of varying calibers and type in each dataset. We then created a fiber bundle template to cluster and label the fiber bundles automatically in new datasets. According to expert evaluation, the automated proximity-based clustering and labeling algorithm consistently yields anatomically plausible fiber bundles on large and coherent clusters. This work has the potential to provide an automatic and robust way to find and study neural fiber bundles within DTI.

Entities:  

Mesh:

Year:  2008        PMID: 18599916      PMCID: PMC2757786          DOI: 10.1109/TVCG.2008.52

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  13 in total

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Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

2.  In vivo fiber tractography using DT-MRI data.

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3.  A global optimisation method for robust affine registration of brain images.

Authors:  M Jenkinson; S Smith
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Review 4.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
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Authors:  Marco Catani; Robert J Howard; Sinisa Pajevic; Derek K Jones
Journal:  Neuroimage       Date:  2002-09       Impact factor: 6.556

6.  Fiber tract-based atlas of human white matter anatomy.

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7.  Classification and quantification of neuronal fiber pathways using diffusion tensor MRI.

Authors:  Zhaohua Ding; John C Gore; Adam W Anderson
Journal:  Magn Reson Med       Date:  2003-04       Impact factor: 4.668

8.  White matter tract clustering and correspondence in populations.

Authors:  Lauren O'Donnell; Carl-Fredrik Westin
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9.  Clustering Fiber Traces Using Normalized Cuts.

Authors:  Anders Brun; Hans Knutsson; Hae-Jeong Park; Martha E Shenton; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2004-09-02

10.  MR microscopy of transgenic mice that spontaneously acquire experimental allergic encephalomyelitis.

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  18 in total

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Journal:  Neuroinformatics       Date:  2015-07

2.  Functional clustering of whole brain white matter fibers.

Authors:  Zhipeng Yang; Xiaojie Li; Jiliu Zhou; Xi Wu; Zhaohua Ding
Journal:  J Neurosci Methods       Date:  2020-02-04       Impact factor: 2.390

3.  Automatic, Age Consistent Reconstruction of the Corpus Callosum Guided by Coherency From In Utero Diffusion-Weighted MRI.

Authors:  David Hunt; Manjiri Dighe; Christopher Gatenby; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2019-08-02       Impact factor: 10.048

4.  Application of neuroanatomical features to tractography clustering.

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Journal:  Hum Brain Mapp       Date:  2012-03-28       Impact factor: 5.038

5.  Alterations in diffusion properties of white matter in Williams syndrome.

Authors:  Lori R Arlinghaus; Tricia A Thornton-Wells; Elisabeth M Dykens; Adam W Anderson
Journal:  Magn Reson Imaging       Date:  2011-09-09       Impact factor: 2.546

Review 6.  Challenges and Opportunities in Connectome Construction and Quantification in the Developing Human Fetal Brain.

Authors:  David Hunt; Manjiri Dighe; Christopher Gatenby; Colin Studholme
Journal:  Top Magn Reson Imaging       Date:  2019-10

7.  Three-dimensional interactive and stereotactic human brain atlas of white matter tracts.

Authors:  Wieslaw L Nowinski; Beng Choon Chua; Guo Liang Yang; Guo Yu Qian
Journal:  Neuroinformatics       Date:  2012-01

8.  Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles.

Authors:  Ke Li; Chuyang Ye; Zhen Yang; Aaron Carass; Sarah H Ying; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

9.  Fiber clustering versus the parcellation-based connectome.

Authors:  Lauren J O'Donnell; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

10.  Unified bundling and registration of brain white matter fibers.

Authors:  Qing Xu; Adam W Anderson; John C Gore; Zhaohua Ding
Journal:  IEEE Trans Med Imaging       Date:  2009-03-24       Impact factor: 10.048

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