Literature DB >> 17240161

Automated 100-position specimen loader and image acquisition system for transmission electron microscopy.

Jonathan Lefman1, Robert Morrison, Sriram Subramaniam.   

Abstract

We report the development of a novel, multi-specimen imaging system for high-throughput transmission electron microscopy. Our cartridge-based loading system, called the "Gatling", permits the sequential examination of as many as 100 specimens in the microscope for room temperature electron microscopy using mechanisms for rapid and automated specimen exchange. The software for the operation of the Gatling and automated data acquisition has been implemented in an updated version of our in-house program AutoEM. In the current implementation of the system, the time required to deliver 95 specimens into the microscope and collect overview images from each is about 13 h. Regions of interest are identified from a low magnification atlas generation from each specimen and an unlimited number of higher magnifications images can be subsequently acquired from these regions using fully automated data acquisition procedures that can be controlled from a remote interface. We anticipate that the availability of the Gatling will greatly accelerate the speed of data acquisition for a variety of applications in biology, materials science, and nanotechnology that require rapid screening and image analysis of multiple specimens.

Mesh:

Year:  2006        PMID: 17240161      PMCID: PMC1952209          DOI: 10.1016/j.jsb.2006.11.007

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  10 in total

1.  Leginon: an automated system for acquisition of images from vitreous ice specimens.

Authors:  B Carragher; N Kisseberth; D Kriegman; R A Milligan; C S Potter; J Pulokas; A Reilein
Journal:  J Struct Biol       Date:  2000-10       Impact factor: 2.867

2.  Leginon: a system for fully automated acquisition of 1000 electron micrographs a day.

Authors:  C S Potter; H Chu; B Frey; C Green; N Kisseberth; T J Madden; K L Miller; K Nahrstedt; J Pulokas; A Reilein; D Tcheng; D Weber; B Carragher
Journal:  Ultramicroscopy       Date:  1999-07       Impact factor: 2.689

3.  Automated data collection with a Tecnai 12 electron microscope: applications for molecular imaging by cryomicroscopy.

Authors:  P Zhang; A Beatty; J L Milne; S Subramaniam
Journal:  J Struct Biol       Date:  2001-09       Impact factor: 2.867

4.  Robotic grid loading system for a transmission electron microscope.

Authors:  Clinton S Potter; James Pulokas; Paul Smith; Christian Suloway; Bridget Carragher
Journal:  J Struct Biol       Date:  2004-06       Impact factor: 2.867

5.  Automated microscopy for electron tomography.

Authors:  A J Koster; H Chen; J W Sedat; D A Agard
Journal:  Ultramicroscopy       Date:  1992-10       Impact factor: 2.689

6.  TOM software toolbox: acquisition and analysis for electron tomography.

Authors:  Stephan Nickell; Friedrich Förster; Alexandros Linaroudis; William Del Net; Florian Beck; Reiner Hegerl; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  J Struct Biol       Date:  2005-03       Impact factor: 2.867

7.  Automated electron microscope tomography using robust prediction of specimen movements.

Authors:  David N Mastronarde
Journal:  J Struct Biol       Date:  2005-10       Impact factor: 2.867

8.  Automated molecular microscopy: the new Leginon system.

Authors:  Christian Suloway; James Pulokas; Denis Fellmann; Anchi Cheng; Francisco Guerra; Joel Quispe; Scott Stagg; Clinton S Potter; Bridget Carragher
Journal:  J Struct Biol       Date:  2005-07       Impact factor: 2.867

9.  Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope.

Authors:  Jianlin Lei; Joachim Frank
Journal:  J Struct Biol       Date:  2005-04       Impact factor: 2.867

10.  emScope: A Tool Kit for Control and Automation of a Remote Electron Microscope

Authors: 
Journal:  J Struct Biol       Date:  1997-12       Impact factor: 2.867

  10 in total
  10 in total

1.  Detection of membrane protein two-dimensional crystals in living cells.

Authors:  E J Gualtieri; F Guo; D J Kissick; J Jose; R J Kuhn; W Jiang; G J Simpson
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

2.  Towards automated screening of two-dimensional crystals.

Authors:  Anchi Cheng; Albert Leung; Denis Fellmann; Joel Quispe; Christian Suloway; James Pulokas; Priyanka D Abeyrathne; Joseph S Lam; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2007-09-25       Impact factor: 2.867

Review 3.  Specimen preparation for electron diffraction of thin crystals.

Authors:  Huaibin Wang; Kenneth H Downing
Journal:  Micron       Date:  2010-05-19       Impact factor: 2.251

Review 4.  Present and future of membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Adv Protein Chem Struct Biol       Date:  2010       Impact factor: 3.507

5.  Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins.

Authors:  Minghui Hu; Martin Vink; Changki Kim; Kd Derr; John Koss; Kevin D'Amico; Anchi Cheng; James Pulokas; Iban Ubarretxena-Belandia; David Stokes
Journal:  J Struct Biol       Date:  2010-03-01       Impact factor: 2.867

6.  Two-dimensional crystallization of integral membrane proteins for electron crystallography.

Authors:  David L Stokes; William J Rice; Minghui Hu; Changki Kim; Iban Ubarretxena-Belandia
Journal:  Methods Mol Biol       Date:  2010

7.  A high-throughput strategy to screen 2D crystallization trials of membrane proteins.

Authors:  Martin Vink; Kd Derr; James Love; David L Stokes; Iban Ubarretxena-Belandia
Journal:  J Struct Biol       Date:  2007-09-14       Impact factor: 2.867

8.  High-throughput methods for electron crystallography.

Authors:  David L Stokes; Iban Ubarretxena-Belandia; Tamir Gonen; Andreas Engel
Journal:  Methods Mol Biol       Date:  2013

Review 9.  Membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Curr Opin Struct Biol       Date:  2012-05-08       Impact factor: 6.809

10.  A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.

Authors:  Zhihao Zheng; J Scott Lauritzen; Eric Perlman; Camenzind G Robinson; Matthew Nichols; Daniel Milkie; Omar Torrens; John Price; Corey B Fisher; Nadiya Sharifi; Steven A Calle-Schuler; Lucia Kmecova; Iqbal J Ali; Bill Karsh; Eric T Trautman; John A Bogovic; Philipp Hanslovsky; Gregory S X E Jefferis; Michael Kazhdan; Khaled Khairy; Stephan Saalfeld; Richard D Fetter; Davi D Bock
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

  10 in total

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