Literature DB >> 17977016

Towards automated screening of two-dimensional crystals.

Anchi Cheng1, Albert Leung, Denis Fellmann, Joel Quispe, Christian Suloway, James Pulokas, Priyanka D Abeyrathne, Joseph S Lam, Bridget Carragher, Clinton S Potter.   

Abstract

Screening trials to determine the presence of two-dimensional (2D) protein crystals suitable for three-dimensional structure determination using electron crystallography is a very labor-intensive process. Methods compatible with fully automated screening have been developed for the process of crystal production by dialysis and for producing negatively stained grids of the resulting trials. Further automation via robotic handling of the EM grids, and semi-automated transmission electron microscopic imaging and evaluation of the trial grids is also possible. We, and others, have developed working prototypes for several of these tools and tested and evaluated them in a simple screen of 24 crystallization conditions. While further development of these tools is certainly required for a turn-key system, the goal of fully automated screening appears to be within reach.

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Year:  2007        PMID: 17977016      PMCID: PMC2141647          DOI: 10.1016/j.jsb.2007.09.012

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  10 in total

1.  Leginon: a system for fully automated acquisition of 1000 electron micrographs a day.

Authors:  C S Potter; H Chu; B Frey; C Green; N Kisseberth; T J Madden; K L Miller; K Nahrstedt; J Pulokas; A Reilein; D Tcheng; D Weber; B Carragher
Journal:  Ultramicroscopy       Date:  1999-07       Impact factor: 2.689

2.  An improved strategy for automated electron microscopic tomography.

Authors:  Qingxiong S Zheng; Michael B Braunfeld; John W Sedat; David A Agard
Journal:  J Struct Biol       Date:  2004-08       Impact factor: 2.867

3.  Robotic grid loading system for a transmission electron microscope.

Authors:  Clinton S Potter; James Pulokas; Paul Smith; Christian Suloway; Bridget Carragher
Journal:  J Struct Biol       Date:  2004-06       Impact factor: 2.867

4.  Automated molecular microscopy: the new Leginon system.

Authors:  Christian Suloway; James Pulokas; Denis Fellmann; Anchi Cheng; Francisco Guerra; Joel Quispe; Scott Stagg; Clinton S Potter; Bridget Carragher
Journal:  J Struct Biol       Date:  2005-07       Impact factor: 2.867

5.  Automated 100-position specimen loader and image acquisition system for transmission electron microscopy.

Authors:  Jonathan Lefman; Robert Morrison; Sriram Subramaniam
Journal:  J Struct Biol       Date:  2006-12-16       Impact factor: 2.867

Review 6.  Electron crystallography of membrane proteins: two-dimensional crystallization and screening by electron microscopy.

Authors:  Ingeborg Schmidt-Krey
Journal:  Methods       Date:  2007-04       Impact factor: 3.608

7.  Parameters for the two-dimensional crystallization of the membrane protein microsomal glutathione transferase.

Authors:  I Schmidt-Krey; G Lundqvist; R Morgenstern; H Hebert
Journal:  J Struct Biol       Date:  1998-10       Impact factor: 2.867

8.  Bio-Beads: an efficient strategy for two-dimensional crystallization of membrane proteins.

Authors:  J L Rigaud; G Mosser; J J Lacapere; A Olofsson; D Levy; J L Ranck
Journal:  J Struct Biol       Date:  1997-04       Impact factor: 2.867

9.  2D crystallization: from art to science.

Authors:  B K Jap; M Zulauf; T Scheybani; A Hefti; W Baumeister; U Aebi; A Engel
Journal:  Ultramicroscopy       Date:  1992-10       Impact factor: 2.689

10.  Detecting particles in cryo-EM micrographs using learned features.

Authors:  Satya P Mallick; Yuanxin Zhu; David Kriegman
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

  10 in total
  17 in total

1.  Assessing two-dimensional crystallization trials of small membrane proteins for structural biology studies by electron crystallography.

Authors:  Matthew C Johnson; Frederik Rudolph; Tina M Dreaden; Gengxiang Zhao; Bridgette A Barry; Ingeborg Schmidt-Krey
Journal:  J Vis Exp       Date:  2010-10-29       Impact factor: 1.355

2.  Detection of membrane protein two-dimensional crystals in living cells.

Authors:  E J Gualtieri; F Guo; D J Kissick; J Jose; R J Kuhn; W Jiang; G J Simpson
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

Review 3.  Electron cryomicroscopy of membrane proteins: specimen preparation for two-dimensional crystals and single particles.

Authors:  Ingeborg Schmidt-Krey; John L Rubinstein
Journal:  Micron       Date:  2010-07-16       Impact factor: 2.251

4.  Transmission electron microscopy as an orthogonal method to characterize protein aggregates.

Authors:  Joyce J Sung; Neha N Pardeshi; Anke M Mulder; Sean K Mulligan; Joel Quispe; Kathy On; Bridget Carragher; Clinton S Potter; John F Carpenter; Anette Schneemann
Journal:  J Pharm Sci       Date:  2014-09-17       Impact factor: 3.534

Review 5.  Specimen preparation for electron diffraction of thin crystals.

Authors:  Huaibin Wang; Kenneth H Downing
Journal:  Micron       Date:  2010-05-19       Impact factor: 2.251

Review 6.  Present and future of membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Adv Protein Chem Struct Biol       Date:  2010       Impact factor: 3.507

7.  Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins.

Authors:  Minghui Hu; Martin Vink; Changki Kim; Kd Derr; John Koss; Kevin D'Amico; Anchi Cheng; James Pulokas; Iban Ubarretxena-Belandia; David Stokes
Journal:  J Struct Biol       Date:  2010-03-01       Impact factor: 2.867

8.  Two-dimensional crystallization conditions of human leukotriene C4 synthase requiring adjustment of a particularly large combination of specific parameters.

Authors:  G Zhao; M C Johnson; J R Schnell; Y Kanaoka; W Haase; D Irikura; B K Lam; I Schmidt-Krey
Journal:  J Struct Biol       Date:  2009-11-10       Impact factor: 2.867

9.  Multiplexed TEM Specimen Preparation and Analysis of Plasmonic Nanoparticles.

Authors:  Sean K Mulligan; Jeffrey A Speir; Ivan Razinkov; Anchi Cheng; John Crum; Tilak Jain; Erika Duggan; Er Liu; John P Nolan; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2015-08       Impact factor: 4.127

Review 10.  Electron crystallography of proteins in membranes.

Authors:  Yoshinori Fujiyoshi; Nigel Unwin
Journal:  Curr Opin Struct Biol       Date:  2008-09-11       Impact factor: 6.809

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