Literature DB >> 17951070

A high-throughput strategy to screen 2D crystallization trials of membrane proteins.

Martin Vink1, Kd Derr, James Love, David L Stokes, Iban Ubarretxena-Belandia.   

Abstract

Electron microscopy of two-dimensional (2D) crystals has demonstrated potential for structure determination of membrane proteins. Technical limitations in large-scale crystallization screens have, however, prevented a major breakthrough in the routine application of this technology. Dialysis is generally used for detergent removal and reconstitution of the protein into a lipid bilayer, and devices for testing numerous conditions in parallel are not readily available. Furthermore, the small size of resulting 2D crystals requires electron microscopy to evaluate the results and automation of the necessary steps is essential to achieve a reasonable throughput. We have designed a crystallization block, using standard microplate dimensions, by which 96 unique samples can be dialyzed simultaneously against 96 different buffers and have demonstrated that the rate of detergent dialysis is comparable to those obtained with conventional dialysis devices. A liquid-handling robot was employed to set up 2D crystallization trials with the membrane proteins CopA from Archaeoglobus fulgidus and light-harvesting complex II (LH2) from Rhodobacter sphaeroides. For CopA, 1 week of dialysis yielded tubular crystals and, for LH2, large and well-ordered vesicular 2D crystals were obtained after 24 h, illustrating the feasibility of this approach. Combined with a high-throughput procedure for preparation of EM-grids and automation of the subsequent negative staining step, the crystallization block offers a novel pipeline that promises to speed up large-scale screening of 2D crystallization and to increase the likelihood of producing well-ordered crystals for analysis by electron crystallography.

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Year:  2007        PMID: 17951070      PMCID: PMC2211413          DOI: 10.1016/j.jsb.2007.09.003

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  37 in total

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Journal:  J Struct Biol       Date:  2004-06       Impact factor: 2.867

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Authors:  J L Rigaud; G Mosser; J J Lacapere; A Olofsson; D Levy; J L Ranck
Journal:  J Struct Biol       Date:  1997-04       Impact factor: 2.867

6.  Site-directed modification of the ligands to the bacteriochlorophylls of the light-harvesting LH1 and LH2 complexes of Rhodobacter sphaeroides.

Authors:  J D Olsen; J N Sturgis; W H Westerhuis; G J Fowler; C N Hunter; B Robert
Journal:  Biochemistry       Date:  1997-10-14       Impact factor: 3.162

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Journal:  Nature       Date:  1994-02-17       Impact factor: 49.962

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Journal:  J Biol Chem       Date:  1983-02-25       Impact factor: 5.157

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Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

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Journal:  Ultramicroscopy       Date:  1992-10       Impact factor: 2.689

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  18 in total

1.  An automated pipeline to screen membrane protein 2D crystallization.

Authors:  Changki Kim; Martin Vink; Minghui Hu; James Love; David L Stokes; Iban Ubarretxena-Belandia
Journal:  J Struct Funct Genomics       Date:  2010-03-27

2.  Assessing two-dimensional crystallization trials of small membrane proteins for structural biology studies by electron crystallography.

Authors:  Matthew C Johnson; Frederik Rudolph; Tina M Dreaden; Gengxiang Zhao; Bridgette A Barry; Ingeborg Schmidt-Krey
Journal:  J Vis Exp       Date:  2010-10-29       Impact factor: 1.355

3.  Detection of membrane protein two-dimensional crystals in living cells.

Authors:  E J Gualtieri; F Guo; D J Kissick; J Jose; R J Kuhn; W Jiang; G J Simpson
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

4.  Structure of the SLC4 transporter Bor1p in an inward-facing conformation.

Authors:  Nicolas Coudray; Sean L Seyler; Ralph Lasala; Zhening Zhang; Kathy M Clark; Mark E Dumont; Alexis Rohou; Oliver Beckstein; David L Stokes
Journal:  Protein Sci       Date:  2016-10-21       Impact factor: 6.725

5.  2D Electron Crystallography of Membrane Protein Single-, Double-, and Multi-Layered Ordered Arrays.

Authors:  Matthew C Johnson; Yusuf M Uddin; Kasahun Neselu; Ingeborg Schmidt-Krey
Journal:  Methods Mol Biol       Date:  2021

6.  Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.

Authors:  Nicolas Coudray; Salvatore Valvo; Minghui Hu; Ralph Lasala; Changki Kim; Martin Vink; Ming Zhou; Davide Provasi; Marta Filizola; Juoehi Tao; Jia Fang; Pawel A Penczek; Iban Ubarretxena-Belandia; David L Stokes
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

Review 7.  Present and future of membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Adv Protein Chem Struct Biol       Date:  2010       Impact factor: 3.507

8.  Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins.

Authors:  Minghui Hu; Martin Vink; Changki Kim; Kd Derr; John Koss; Kevin D'Amico; Anchi Cheng; James Pulokas; Iban Ubarretxena-Belandia; David Stokes
Journal:  J Struct Biol       Date:  2010-03-01       Impact factor: 2.867

9.  Two-dimensional crystallization conditions of human leukotriene C4 synthase requiring adjustment of a particularly large combination of specific parameters.

Authors:  G Zhao; M C Johnson; J R Schnell; Y Kanaoka; W Haase; D Irikura; B K Lam; I Schmidt-Krey
Journal:  J Struct Biol       Date:  2009-11-10       Impact factor: 2.867

10.  Reconstitution of a Kv channel into lipid membranes for structural and functional studies.

Authors:  Sungsoo Lee; Hui Zheng; Liang Shi; Qiu-Xing Jiang
Journal:  J Vis Exp       Date:  2013-07-13       Impact factor: 1.355

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