Literature DB >> 17075056

Phase knowledge enables rational screens for protein crystallization.

Megan J Anderson1, Carl L Hansen, Stephen R Quake.   

Abstract

We show that knowledge of the phase behavior of a protein allows one to create a rational screen that increases the success rate of crystallizing challenging proteins. The strategy is based on using microfluidics to perform large numbers of protein solubility experiments across many different chemical conditions to identify reagents for crystallization experiments. Phase diagrams were generated for the identified reagents and used to design customized crystallization screens for every protein. This strategy was applied with a 75% success rate to the crystallization of 12 diverse proteins, most of which failed to crystallize when using traditional techniques. The overall diffraction success rate was 33%, about double what was achieved with conventional automation in large-scale protein structure consortia. The higher diffraction success rates are achieved by designing customized crystallization screens using the phase behavior information for each target. The identification of reagents based on an understanding of protein solubility and the use of phase diagrams in the design of individualized crystallization screens therefore promotes high crystallization rates and the production of diffraction-quality crystals.

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Year:  2006        PMID: 17075056      PMCID: PMC1636526          DOI: 10.1073/pnas.0605293103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

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Authors:  Emmanuel Saridakis; Naomi E Chayen
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

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4.  Scientific approach to the optimization of protein crystallization conditions for microgravity experiments.

Authors:  Izumi Yoshizaki; Hirohiko Nakamura; Seijiro Fukuyama; Hiroshi Komatsu; Shinichi Yoda
Journal:  Ann N Y Acad Sci       Date:  2004-11       Impact factor: 5.691

5.  Crystallizing proteins on the basis of their precipitation diagram determined using a microfluidic formulator.

Authors:  Morten O A Sommer; Sine Larsen
Journal:  J Synchrotron Radiat       Date:  2005-10-18       Impact factor: 2.616

6.  A microfluidic device for kinetic optimization of protein crystallization and in situ structure determination.

Authors:  Carl L Hansen; Scott Classen; James M Berger; Stephen R Quake
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

7.  Solubility diagram of the Rhodobacter sphaeroides reaction center as a function of PEG concentration.

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Journal:  FEBS Lett       Date:  1997-01-20       Impact factor: 4.124

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Authors:  M M Ries-Kautt; A F Ducruix
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

9.  Protein crystallization using incomplete factorial experiments.

Authors:  C W Carter; C W Carter
Journal:  J Biol Chem       Date:  1979-12-10       Impact factor: 5.157

10.  Relative effectiveness of various anions on the solubility of acidic Hypoderma lineatum collagenase at pH 7.2.

Authors:  C Carbonnaux; M Ries-Kautt; A Ducruix
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

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  15 in total

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Review 3.  Microfluidics for drug discovery and development: from target selection to product lifecycle management.

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4.  Pneumatic oscillator circuits for timing and control of integrated microfluidics.

Authors:  Philip N Duncan; Transon V Nguyen; Elliot E Hui
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-21       Impact factor: 11.205

5.  Chip in a lab: Microfluidics for next generation life science research.

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Journal:  Biomicrofluidics       Date:  2013-01-31       Impact factor: 2.800

6.  Graphene-based microfluidics for serial crystallography.

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7.  Microfluidic characterization of macromolecular liquid-liquid phase separation.

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Journal:  Lab Chip       Date:  2020-11-10       Impact factor: 6.799

8.  What's in a drop? Correlating observations and outcomes to guide macromolecular crystallization experiments.

Authors:  Joseph R Luft; Jennifer R Wolfley; Edward H Snell
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9.  An X-ray transparent microfluidic platform for screening of the phase behavior of lipidic mesophases.

Authors:  Daria S Khvostichenko; Elena Kondrashkina; Sarah L Perry; Ashtamurthy S Pawate; Keith Brister; Paul J A Kenis
Journal:  Analyst       Date:  2013-07-24       Impact factor: 4.616

10.  Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods.

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Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

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