Literature DB >> 16622654

Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase-inhibitor complex.

M P Blakeley1, A Mitschler, I Hazemann, F Meilleur, D A A Myles, A Podjarny.   

Abstract

Protonation states determination by neutron (2.2 A at room temperature) and X-ray (0.66 A at 100 K) crystallographic studies were compared for a medium size enzyme, human aldose reductase (MW=36 kDa), complexed with its NADP+ coenzyme and a selected inhibitor of therapeutic interest. The neutron resolution could be achieved only with the ab initio fully deuterated protein and the subsequent crystallization in D2O of the complex. We used the largest good-quality crystal (1.00x0.67x0.23 mm, i.e. volume of 0.15 mm3) that we were able to grow so far. Both studies enable the determination of protonation states, with a clear advantage for neutrons in the case of less-ordered atoms (B>5 A2). Hydrogen atoms are best determined by a complementary analysis of the Fourier maps obtained from both methods.

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Year:  2006        PMID: 16622654     DOI: 10.1007/s00249-006-0064-8

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  18 in total

1.  Infrared methods for monitoring the protonation state of carboxylic amino acids in the photocycle of bacteriorhodopsin.

Authors:  A K Dioumaev
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Review 2.  Recent advances in atomic resolution protein crystallography.

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3.  Structural stability and dynamics of hydrogenated and perdeuterated cytochrome P450cam (CYP101).

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4.  The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results.

Authors:  Gerd Rosenbaum; Randy W Alkire; Gwyndaf Evans; Frank J Rotella; Krzystof Lazarski; Rong Guang Zhang; Stephan L Ginell; Norma Duke; Istvan Naday; Jack Lazarz; Michael J Molitsky; Lisa Keefe; John Gonczy; Larry Rock; Ruslan Sanishvili; Martin A Walsh; Edwin Westbrook; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2005-12-22       Impact factor: 2.616

5.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

6.  The role of back-reactions and proton uptake during the N----O transition in bacteriorhodopsin's photocycle: a kinetic resonance Raman study.

Authors:  J B Ames; R A Mathies
Journal:  Biochemistry       Date:  1990-08-07       Impact factor: 3.162

Review 7.  The benefits of atomic resolution.

Authors:  Z Dauter; V S Lamzin; K S Wilson
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

8.  Direct determination of the positions of the deuterium atoms of the bound water in -concanavalin A by neutron Laue crystallography.

Authors:  J Habash; J Raftery; R Nuttall; H J Price; C Wilkinson; A J Kalb; J R Helliwell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-05

Review 9.  Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.

Authors:  Thomas K Harris; George J Turner
Journal:  IUBMB Life       Date:  2002-02       Impact factor: 3.885

10.  Ultrahigh resolution drug design I: details of interactions in human aldose reductase-inhibitor complex at 0.66 A.

Authors:  E I Howard; R Sanishvili; R E Cachau; A Mitschler; B Chevrier; P Barth; V Lamour; M Van Zandt; E Sibley; C Bon; D Moras; T R Schneider; A Joachimiak; A Podjarny
Journal:  Proteins       Date:  2004-06-01
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  8 in total

Review 1.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

2.  Structural and thermodynamic studies of simple aldose reductase-inhibitor complexes.

Authors:  June M Brownlee; Erik Carlson; Amy C Milne; Erika Pape; David H T Harrison
Journal:  Bioorg Chem       Date:  2006-11-02       Impact factor: 5.275

3.  Crystallization of porcine pancreatic elastase and a preliminary neutron diffraction experiment.

Authors:  Takayoshi Kinoshita; Taro Tamada; Keisuke Imai; Kazuo Kurihara; Takashi Ohhara; Toshiji Tada; Ryota Kuroki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-03-12

4.  A preliminary neutron crystallographic study of an A-DNA crystal.

Authors:  Ricardo M F Leal; Susana C M Teixeira; Matthew P Blakeley; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-12

5.  A preliminary neutron crystallographic study of thaumatin.

Authors:  Susana C M Teixeira; Matthew P Blakeley; Ricardo M F Leal; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-04-05

6.  Engineering an improved crystal contact across a solvent-mediated interface of human fibroblast growth factor 1.

Authors:  Akshaya K Meher; Sachiko I Blaber; Jihun Lee; Ejiro Honjo; Ryota Kuroki; Michael Blaber
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-30

7.  Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinement.

Authors:  Marc-Michael Blum; Marat Mustyakimov; Heinz Rüterjans; Kai Kehe; Benno P Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-09       Impact factor: 11.205

Review 8.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

  8 in total

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