Literature DB >> 17401204

Crystallization of porcine pancreatic elastase and a preliminary neutron diffraction experiment.

Takayoshi Kinoshita1, Taro Tamada, Keisuke Imai, Kazuo Kurihara, Takashi Ohhara, Toshiji Tada, Ryota Kuroki.   

Abstract

Porcine pancreatic elastase (PPE) resembles the attractive drug target leukocyte elastase, which has been implicated in a number of inflammatory disorders. In order to investigate the structural characteristics of a covalent inhibitor bound to PPE, including H atoms and the hydration by water, a single crystal of PPE for neutron diffraction study was grown in D(2)O containing 0.2 M sodium sulfate (pD 5.0) using the sitting-drop vapour-diffusion method. The crystal was grown to a size of 1.6 mm(3) by repeated macroseeding. Neutron diffraction data were collected at room temperature using a BIX-3 diffractometer at the JRR-3 research reactor of the Japan Atomic Energy Agency (JAEA). The data set was integrated and scaled to 2.3 A resolution in space group P2(1)2(1)2(1), with unit-cell parameters a = 51.2, b = 57.8, c = 75.6 A.

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Year:  2007        PMID: 17401204      PMCID: PMC2330211          DOI: 10.1107/S1744309107010433

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  True interaction mode of porcine pancreatic elastase with FR136706, a potent peptidyl inhibitor.

Authors:  Takayoshi Kinoshita; Isao Nakanishi; Akihiro Sato; Toshiji Tada
Journal:  Bioorg Med Chem Lett       Date:  2003-01-06       Impact factor: 2.823

2.  Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase-inhibitor complex.

Authors:  M P Blakeley; A Mitschler; I Hazemann; F Meilleur; D A A Myles; A Podjarny
Journal:  Eur Biophys J       Date:  2006-04-19       Impact factor: 1.733

3.  The 15-K neutron structure of saccharide-free concanavalin A.

Authors:  M P Blakeley; A J Kalb; J R Helliwell; D A A Myles
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-03       Impact factor: 11.205

4.  The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.

Authors:  Toshiyuki Chatake; Ichiro Tanaka; Hisao Umino; Shigeki Arai; Nobuo Niimura
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

Review 5.  The low barrier hydrogen bond in enzymatic catalysis.

Authors:  W W Cleland; P A Frey; J A Gerlt
Journal:  J Biol Chem       Date:  1998-10-02       Impact factor: 5.157

6.  Structure of porcine pancreatic elastase complexed with FR901277, a novel macrocyclic inhibitor of elastases, at 1.6 A resolution.

Authors:  I Nakanishi; T Kinoshita; A Sato; T Tada
Journal:  Biopolymers       Date:  2000-04-15       Impact factor: 2.505

7.  Tris(hydroxymethyl)aminomethane induces conformational change and crystal-packing contraction of porcine pancreatic elastase.

Authors:  Takayoshi Kinoshita; Asako Yamaguchi; Toshiji Tada
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-06-26

8.  Structure of the complex of porcine pancreatic elastase with a trimacrocyclic peptide inhibitor FR901451.

Authors:  Takayoshi Kinoshita; Tomoya Kitatani; Masaichi Warizaya; Toshiji Tada
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-08-31

9.  Stereochemistry of binding of the tetrapeptide acetyl-Pro-Ala-Pro-Tyr-NH2 to porcine pancreatic elastase. Combined use of two-dimensional transferred nuclear Overhauser enhancement measurements, restrained molecular dynamics, X-ray crystallography and molecular modelling.

Authors:  G M Clore; A M Gronenborn; G Carlson; E F Meyer
Journal:  J Mol Biol       Date:  1986-07-20       Impact factor: 5.469

10.  Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements.

Authors:  Shigeki Arai; Toshiyuki Chatake; Takashi Ohhara; Kazuo Kurihara; Ichiro Tanaka; Nobuhiro Suzuki; Zui Fujimoto; Hiroshi Mizuno; Nobuo Niimura
Journal:  Nucleic Acids Res       Date:  2005-05-24       Impact factor: 16.971

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  1 in total

Review 1.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

  1 in total

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