Literature DB >> 18656544

Neutron crystallography: opportunities, challenges, and limitations.

Matthew P Blakeley1, Paul Langan, Nobuo Niimura, Alberto Podjarny.   

Abstract

Neutron crystallography has had an important, but relatively small role in structural biology over the years. In this review of recently determined neutron structures, a theme emerges of a field currently expanding beyond its traditional boundaries, to address larger and more complex problems, with smaller samples and shorter data collection times, and employing more sophisticated structure determination and refinement methods. The origin of this transformation can be found in a number of advances including first, the development of neutron image-plates and quasi-Laue methods at nuclear reactor neutron sources and the development of time-of-flight Laue methods and electronic detectors at spallation neutron sources; second, new facilities and methods for sample perdeuteration and crystallization; third, new approaches and computational tools for structure determination.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18656544      PMCID: PMC2586829          DOI: 10.1016/j.sbi.2008.06.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  44 in total

1.  Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.

Authors:  Toshiyuki Chatake; Nobuhiro Mizuno; Gerrit Voordouw; Yoshiki Higuchi; Shigeki Arai; Ichiro Tanaka; Nobuo Niimura
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-11-27

2.  Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules.

Authors:  Kazuo Kurihara; Ichiro Tanaka; Toshiyuki Chatake; Michael W W Adams; Francis E Jenney; Natalia Moiseeva; Robert Bau; Nobuo Niimura
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

3.  Synthesis, capillary crystallization and preliminary joint X-ray and neutron crystallographic study of Z-DNA without polyamine at low pH.

Authors:  Paul Langan; Xinmin Li; B Leif Hanson; Leighton Coates; Marat Mustyakimov
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-04-12

4.  Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Authors:  Matthew P Blakeley; Federico Ruiz; Raul Cachau; Isabelle Hazemann; Flora Meilleur; Andre Mitschler; Stephan Ginell; Pavel Afonine; Oscar N Ventura; Alexandra Cousido-Siah; Michael Haertlein; Andrzej Joachimiak; Dean Myles; Alberto Podjarny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

Review 5.  Neutron protein crystallography: current status and a brighter future.

Authors:  Dean A A Myles
Journal:  Curr Opin Struct Biol       Date:  2006-09-11       Impact factor: 6.809

6.  Binding of a designed substrate analogue to diisopropyl fluorophosphatase: implications for the phosphotriesterase mechanism.

Authors:  Marc-Michael Blum; Frank Löhr; Andre Richardt; Heinz Rüterjans; Julian C-H Chen
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

7.  Neutron and X-ray structural studies of short hydrogen bonds in photoactive yellow protein (PYP).

Authors:  S Z Fisher; S Anderson; R Henning; K Moffat; P Langan; P Thiyagarajan; A J Schultz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-10-17

8.  Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution.

Authors:  Andreas Ostermann; Ichiro Tanaka; Niklas Engler; Nobuo Niimura; Fritz G Parak
Journal:  Biophys Chem       Date:  2002-03-28       Impact factor: 2.352

9.  Crystallization of a large single crystal of cubic insulin for neutron protein crystallography.

Authors:  M Maeda; T Chatake; I Tanaka; A Ostermann; N Niimura
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

10.  Protein structures by spallation neutron crystallography.

Authors:  Paul Langan; Zoë Fisher; Andrii Kovalevsky; Marat Mustyakimov; Amanda Sutcliffe Valone; Cliff Unkefer; Mary Jo Waltman; Leighton Coates; Paul D Adams; Pavel V Afonine; Brad Bennett; Chris Dealwis; Benno P Schoenborn
Journal:  J Synchrotron Radiat       Date:  2008-04-18       Impact factor: 2.616

View more
  50 in total

1.  High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K.

Authors:  Toshiyuki Chatake; Takuya Ishikawa; Yasuhide Yanagisawa; Taro Yamada; Ichiro Tanaka; Satoru Fujiwara; Yukio Morimoro
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-25

2.  Preliminary neutron and X-ray crystallographic studies of equine cyanomethemoglobin.

Authors:  A Y Kovalevsky; S Zoe Fisher; Sean Seaver; Marat Mustyakimov; Narayanasami Sukumar; Paul Langan; Timothy C Mueser; B Leif Hanson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

3.  A joint x-ray and neutron study on amicyanin reveals the role of protein dynamics in electron transfer.

Authors:  N Sukumar; F S Mathews; P Langan; V L Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-29       Impact factor: 11.205

4.  Joint X-ray and neutron refinement with phenix.refine.

Authors:  Pavel V Afonine; Marat Mustyakimov; Ralf W Grosse-Kunstleve; Nigel W Moriarty; Paul Langan; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

5.  Design guidelines for an electron diffractometer for structural chemistry and structural biology.

Authors:  Jonas Heidler; Radosav Pantelic; Julian T C Wennmacher; Christian Zaubitzer; Ariane Fecteau-Lefebvre; Kenneth N Goldie; Elisabeth Müller; Julian J Holstein; Eric van Genderen; Sacha De Carlo; Tim Gruene
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-04-08       Impact factor: 7.652

6.  A preliminary neutron crystallographic study of an A-DNA crystal.

Authors:  Ricardo M F Leal; Susana C M Teixeira; Matthew P Blakeley; Edward P Mitchell; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-12

7.  Protonation states of histidine and other key residues in deoxy normal human adult hemoglobin by neutron protein crystallography.

Authors:  Andrey Kovalevsky; Toshiyuki Chatake; Naoya Shibayama; Sam Yong Park; Takuya Ishikawa; Marat Mustyakimov; S Zoe Fisher; Paul Langan; Yukio Morimoto
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

8.  Macromolecular neutron crystallography at the Protein Crystallography Station (PCS).

Authors:  Andrey Kovalevsky; Zoe Fisher; Hannah Johnson; Marat Mustyakimov; Mary Jo Waltman; Paul Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

Review 9.  Neutrons for biologists: a beginner's guide, or why you should consider using neutrons.

Authors:  Jeremy H Lakey
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

10.  Refinement of macromolecular structures against neutron data with SHELXL2013.

Authors:  Tim Gruene; Hinrich W Hahn; Anna V Luebben; Flora Meilleur; George M Sheldrick
Journal:  J Appl Crystallogr       Date:  2013-12-07       Impact factor: 3.304

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.