Literature DB >> 16598011

Analysis of the thermostability determinants of hyperthermophilic esterase EstE1 based on its predicted three-dimensional structure.

Jin-Kyu Rhee1, Do-Yun Kim, Dae-Gyun Ahn, Jung-Hyuk Yun, Seung-Hwan Jang, Hang-Cheol Shin, Hyun-Soo Cho, Jae-Gu Pan, Jong-Won Oh.   

Abstract

The three-dimensional (3D) structure of the hyperthermophilic esterase EstE1 was constructed by homology modeling using Archaeoglobus fulgidus esterase as a reference, and the thermostability-structure relationship was analyzed. Our results verified the predicted 3D structure of EstE1 and identified the ion pair networks and hydrophobic interactions that are critical determinants for the thermostability of EstE1.

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Year:  2006        PMID: 16598011      PMCID: PMC1449032          DOI: 10.1128/AEM.72.4.3021-3025.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  20 in total

1.  The alpha/beta hydrolase fold.

Authors:  D L Ollis; E Cheah; M Cygler; B Dijkstra; F Frolow; S M Franken; M Harel; S J Remington; I Silman; J Schrag
Journal:  Protein Eng       Date:  1992-04

2.  Assessment of protein models with three-dimensional profiles.

Authors:  R Lüthy; J U Bowie; D Eisenberg
Journal:  Nature       Date:  1992-03-05       Impact factor: 49.962

3.  AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR.

Authors:  R A Laskowski; J A Rullmannn; M W MacArthur; R Kaptein; J M Thornton
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

4.  Structural basis for thermostability and identification of potential active site residues for adenylate kinases from the archaeal genus Methanococcus.

Authors:  P Haney; J Konisky; K K Koretke; Z Luthey-Schulten; P G Wolynes
Journal:  Proteins       Date:  1997-05

5.  Thermal stability and protein structure.

Authors:  P Argos; M G Rossman; U M Grau; H Zuber; G Frank; J D Tratschin
Journal:  Biochemistry       Date:  1979-12-11       Impact factor: 3.162

6.  Comparative protein modelling by satisfaction of spatial restraints.

Authors:  A Sali; T L Blundell
Journal:  J Mol Biol       Date:  1993-12-05       Impact factor: 5.469

7.  New thermophilic and thermostable esterase with sequence similarity to the hormone-sensitive lipase family, cloned from a metagenomic library.

Authors:  Jin-Kyu Rhee; Dae-Gyun Ahn; Yeon-Gu Kim; Jong-Won Oh
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

8.  Crystal structure of brefeldin A esterase, a bacterial homolog of the mammalian hormone-sensitive lipase.

Authors:  Y Wei; J A Contreras; P Sheffield; T Osterlund; U Derewenda; R E Kneusel; U Matern; C Holm; Z S Derewenda
Journal:  Nat Struct Biol       Date:  1999-04

9.  Insights into thermal stability from a comparison of the glutamate dehydrogenases from Pyrococcus furiosus and Thermococcus litoralis.

Authors:  K L Britton; P J Baker; K M Borges; P C Engel; A Pasquo; D W Rice; F T Robb; R Scandurra; T J Stillman; K S Yip
Journal:  Eur J Biochem       Date:  1995-05-01

10.  Analysis of thermal adaptation in the HSL enzyme family.

Authors:  L Mandrich; M Pezzullo; P Del Vecchio; G Barone; M Rossi; G Manco
Journal:  J Mol Biol       Date:  2004-01-02       Impact factor: 5.469

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  6 in total

1.  Interdomain hydrophobic interactions modulate the thermostability of microbial esterases from the hormone-sensitive lipase family.

Authors:  Ping-Yi Li; Xiu-Lan Chen; Peng Ji; Chun-Yang Li; Peng Wang; Yi Zhang; Bin-Bin Xie; Qi-Long Qin; Hai-Nan Su; Bai-Cheng Zhou; Yu-Zhong Zhang; Xi-Ying Zhang
Journal:  J Biol Chem       Date:  2015-03-14       Impact factor: 5.157

2.  Structural basis for dimerization and catalysis of a novel esterase from the GTSAG motif subfamily of the bacterial hormone-sensitive lipase family.

Authors:  Ping-Yi Li; Peng Ji; Chun-Yang Li; Yi Zhang; Guang-Long Wang; Xi-Ying Zhang; Bin-Bin Xie; Qi-Long Qin; Xiu-Lan Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Biol Chem       Date:  2014-05-27       Impact factor: 5.157

3.  Characterization and Low-Resolution Structure of an Extremely Thermostable Esterase of Potential Biotechnological Interest from Pyrococcus furiosus.

Authors:  F Mandelli; T A Gonçalves; C A Gandin; A C P Oliveira; M Oliveira Neto; F M Squina
Journal:  Mol Biotechnol       Date:  2016-11       Impact factor: 2.695

4.  Conserved tyrosine 182 residue in hyperthermophilic esterase EstE1 plays a critical role in stabilizing the active site.

Authors:  Ngoc Truongvan; Hye-Shin Chung; Sei-Heon Jang; ChangWoo Lee
Journal:  Extremophiles       Date:  2016-02-02       Impact factor: 2.395

Review 5.  Carboxylic ester hydrolases from hyperthermophiles.

Authors:  Mark Levisson; John van der Oost; Servé W M Kengen
Journal:  Extremophiles       Date:  2009-06-21       Impact factor: 2.395

6.  Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties.

Authors:  Jung-Sue Byun; Jin-Kyu Rhee; Nam Doo Kim; Jeonghyeok Yoon; Dong-Uk Kim; Eunhee Koh; Jong-Won Oh; Hyun-Soo Cho
Journal:  BMC Struct Biol       Date:  2007-07-12
  6 in total

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