Literature DB >> 14659763

Analysis of thermal adaptation in the HSL enzyme family.

L Mandrich1, M Pezzullo, P Del Vecchio, G Barone, M Rossi, G Manco.   

Abstract

The recently solved three-dimensional (3D) structures of two thermostable members of the carboxylesterase/lipase HSL family, namely the Alicyclobacillus (formerly Bacillus) acidocaldarius and Archaeoglobus fulgidus carboxylesterases (EST2 and AFEST, respectively) were compared with that of the mesophilic homologous counterpart Brefeldine A esterase from Bacillus subtilis. Since the 3D homology models of other members of the HSL family were also available, we performed a structural alignment with all these sequences. The resulting alignment was used to assess the amino acid "traffic rule" in the HSL family. Quite surprisingly, the data were in very good agreement with those recently reported from two independent groups and based on the comparison of a huge number of homologous sequences from the genus Bacillus, Methanococcus and Deinococcus/Thermus. Taken as a whole, the data point to the statistical meaning of defined amino acid conversions going from psychrophilic to hyperthermophilic sequences. We identified and mapped several such changes onto the EST2 structure and observed that such mutations were localized mostly in loops regions or alpha-helices and were mostly excluded from the active site. A site-directed mutagenesis of two of the identified residues confirmed they were involved in thermal stability.

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Year:  2004        PMID: 14659763     DOI: 10.1016/j.jmb.2003.10.038

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  15 in total

1.  Analysis of the thermostability determinants of hyperthermophilic esterase EstE1 based on its predicted three-dimensional structure.

Authors:  Jin-Kyu Rhee; Do-Yun Kim; Dae-Gyun Ahn; Jung-Hyuk Yun; Seung-Hwan Jang; Hang-Cheol Shin; Hyun-Soo Cho; Jae-Gu Pan; Jong-Won Oh
Journal:  Appl Environ Microbiol       Date:  2006-04       Impact factor: 4.792

2.  Functional characterization of hormone sensitive-like lipase from Bacillus halodurans: synthesis and recovery of pNP-laurate with high yields.

Authors:  Ashima Dua; Rani Gupta
Journal:  Extremophiles       Date:  2017-07-14       Impact factor: 2.395

3.  New member of the hormone-sensitive lipase family from the permafrost microbial community.

Authors:  Lada E Petrovskaya; Ksenia A Novototskaya-Vlasova; Sultan Sh Gapizov; Elena V Spirina; Ekaterina V Durdenko; Elizaveta M Rivkina
Journal:  Bioengineered       Date:  2016-10-18       Impact factor: 3.269

4.  PROTS: a fragment based protein thermo-stability potential.

Authors:  Yunqi Li; Jian Zhang; David Tai; C Russell Middaugh; Yang Zhang; Jianwen Fang
Journal:  Proteins       Date:  2011-10-05

5.  Association of HSL gene E1-c.276C>T and E8-c.51C>T mutation with economical traits of Chinese Simmental cattle.

Authors:  X B Fang; L P Zhang; X Z Yu; J Y Li; C Y Lu; Z H Zhao; R J Yang
Journal:  Mol Biol Rep       Date:  2013-11-10       Impact factor: 2.316

6.  Salt-dependent studies of NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii.

Authors:  Dominique Madern; Mónica Camacho; Adoración Rodríguez-Arnedo; María-José Bonete; Giuseppe Zaccai
Journal:  Extremophiles       Date:  2004-06-18       Impact factor: 2.395

7.  Expression, purification, crystallization and preliminary crystallographic analysis of a stand-alone RAM domain with hydrolytic activity from the hyperthermophile Pyrococcus furiosus.

Authors:  Ramelito C Agapay; Savvas N Savvides; Gonzalez Van Driessche; Bart Devreese; Jozef Van Beeumen; Jaap A Jongejan; Wilfred R Hagen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-09-30

Review 8.  Integrative computational approach for genome-based study of microbial lipid-degrading enzymes.

Authors:  Tayvich Vorapreeda; Chinae Thammarongtham; Kobkul Laoteng
Journal:  World J Microbiol Biotechnol       Date:  2016-06-04       Impact factor: 3.312

Review 9.  Carboxylic ester hydrolases from hyperthermophiles.

Authors:  Mark Levisson; John van der Oost; Servé W M Kengen
Journal:  Extremophiles       Date:  2009-06-21       Impact factor: 2.395

10.  In silico classification of proteins from acidic and neutral cytoplasms.

Authors:  Yaping Fang; C Russell Middaugh; Jianwen Fang
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

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