Literature DB >> 24867954

Structural basis for dimerization and catalysis of a novel esterase from the GTSAG motif subfamily of the bacterial hormone-sensitive lipase family.

Ping-Yi Li1, Peng Ji1, Chun-Yang Li1, Yi Zhang1, Guang-Long Wang1, Xi-Ying Zhang2, Bin-Bin Xie2, Qi-Long Qin2, Xiu-Lan Chen2, Bai-Cheng Zhou1, Yu-Zhong Zhang3.   

Abstract

Hormone-sensitive lipases (HSLs) are widely distributed in microorganisms, plants, and animals. Microbial HSLs are classified into two subfamilies, an unnamed new subfamily and the GDSAG motif subfamily. Due to the lack of structural information, the detailed catalytic mechanism of the new subfamily is not yet clarified. Based on sequence analysis, we propose to name the new subfamily as the GTSAG motif subfamily. We identified a novel HSL esterase E25, a member of the GTSAG motif subfamily, by functional metagenomic screening, and resolved its structure at 2.05 Å. E25 is mesophilic (optimum temperature at 50 °C), salt-tolerant, slightly alkaline (optimum pH at 8.5) for its activity, and capable of hydrolyzing short chain monoesters (C2-C10). E25 tends to form dimers both in the crystal and in solution. An E25 monomer contains an N-terminal CAP domain, and a classical α/β hydrolase-fold domain. Residues Ser(186), Asp(282), and His(312) comprise the catalytic triad. Structural and mutational analyses indicated that E25 adopts a dimerization pattern distinct from other HSLs. E25 dimer is mainly stabilized by an N-terminal loop intersection from the CAP domains and hydrogen bonds and salt bridges involving seven highly conserved hydrophilic residues from the catalytic domains. Further analysis indicated that E25 also has some catalytic profiles different from other HSLs. Dimerization is essential for E25 to exert its catalytic activity by keeping the accurate orientation of the catalytic Asp(282) within the catalytic triad. Our results reveal the structural basis for dimerization and catalysis of an esterase from the GTSAG motif subfamily of the HSL family.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Carboxylesterase; Catalysis; Crystal Structure; Dimerization; Enzyme Mechanism; Protein Motif

Mesh:

Substances:

Year:  2014        PMID: 24867954      PMCID: PMC4081941          DOI: 10.1074/jbc.M114.574913

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  33 in total

1.  Bacterial lipolytic enzymes: classification and properties.

Authors:  J L Arpigny; K E Jaeger
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3.  Structural and functional analyses of a bacterial homologue of hormone-sensitive lipase from a metagenomic library.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-15

4.  Role of the N terminus in enzyme activity, stability and specificity in thermophilic esterases belonging to the HSL family.

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Journal:  J Mol Biol       Date:  2005-01-21       Impact factor: 5.469

5.  Analysis of the thermostability determinants of hyperthermophilic esterase EstE1 based on its predicted three-dimensional structure.

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Journal:  Appl Environ Microbiol       Date:  2006-04       Impact factor: 4.792

6.  Structural and functional analysis of a novel hormone-sensitive lipase from a metagenome library.

Authors:  Ki Hyun Nam; Min-Young Kim; Soo-Jin Kim; Amit Priyadarshi; Suk-Tae Kwon; Bon-Sung Koo; Sang-Hong Yoon; Kwang Yeon Hwang
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7.  The crystal structure of a hyper-thermophilic carboxylesterase from the archaeon Archaeoglobus fulgidus.

Authors:  G De Simone; V Menchise; G Manco; L Mandrich; N Sorrentino; D Lang; M Rossi; C Pedone
Journal:  J Mol Biol       Date:  2001-11-30       Impact factor: 5.469

8.  The crystal structure of an esterase from the hyperthermophilic microorganism Pyrobaculum calidifontis VA1 explains its enantioselectivity.

Authors:  Gottfried J Palm; Elena Fernández-Álvaro; Xenia Bogdanović; Sebastian Bartsch; Jaroslaw Sczodrok; Rajesh K Singh; Dominique Böttcher; Haruyuki Atomi; Uwe T Bornscheuer; Winfried Hinrichs
Journal:  Appl Microbiol Biotechnol       Date:  2011-05-26       Impact factor: 4.813

Review 9.  Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases.

Authors:  K E Jaeger; B W Dijkstra; M T Reetz
Journal:  Annu Rev Microbiol       Date:  1999       Impact factor: 15.500

10.  Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobus tokodaii.

Authors:  Clement Angkawidjaja; Yuichi Koga; Kazufumi Takano; Shigenori Kanaya
Journal:  FEBS J       Date:  2012-07-23       Impact factor: 5.542

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  25 in total

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2.  Structural and Mechanistic Insights into the Improvement of the Halotolerance of a Marine Microbial Esterase by Increasing Intra- and Interdomain Hydrophobic Interactions.

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3.  Interdomain hydrophobic interactions modulate the thermostability of microbial esterases from the hormone-sensitive lipase family.

Authors:  Ping-Yi Li; Xiu-Lan Chen; Peng Ji; Chun-Yang Li; Peng Wang; Yi Zhang; Bin-Bin Xie; Qi-Long Qin; Hai-Nan Su; Bai-Cheng Zhou; Yu-Zhong Zhang; Xi-Ying Zhang
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5.  Fluorogenic structure activity library pinpoints molecular variations in substrate specificity of structurally homologous esterases.

Authors:  Alex White; Andrew Koelper; Arielle Russell; Erik M Larsen; Charles Kim; Luke D Lavis; Geoffrey C Hoops; R Jeremy Johnson
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6.  Biochemical characterization of an esterase from Clostridium acetobutylicum with novel GYSMG pentapeptide motif at the catalytic domain.

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7.  Structural Basis for the Strict Substrate Selectivity of the Mycobacterial Hydrolase LipW.

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Journal:  Biochemistry       Date:  2016-12-12       Impact factor: 3.162

8.  A Novel Subfamily Esterase with a Homoserine Transacetylase-like Fold but No Transferase Activity.

Authors:  Ping-Yi Li; Qiong-Qiong Yao; Peng Wang; Yi Zhang; Yue Li; Yan-Qi Zhang; Jie Hao; Bai-Cheng Zhou; Xiu-Lan Chen; Mei Shi; Yu-Zhong Zhang; Xi-Ying Zhang
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

9.  Characterization and Low-Resolution Structure of an Extremely Thermostable Esterase of Potential Biotechnological Interest from Pyrococcus furiosus.

Authors:  F Mandelli; T A Gonçalves; C A Gandin; A C P Oliveira; M Oliveira Neto; F M Squina
Journal:  Mol Biotechnol       Date:  2016-11       Impact factor: 2.695

10.  Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases.

Authors:  Dimitra Zarafeta; Danai Moschidi; Efthymios Ladoukakis; Sergey Gavrilov; Evangelia D Chrysina; Aristotelis Chatziioannou; Ilya Kublanov; Georgios Skretas; Fragiskos N Kolisis
Journal:  Sci Rep       Date:  2016-12-19       Impact factor: 4.379

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