Literature DB >> 18427600

Machine learning classifiers detect subtle field defects in eyes of HIV individuals.

Igor Kozak1, Pamela A Sample, Jiucang Hao, William R Freeman, Robert N Weinreb, Te-Won Lee, Michael H Goldbaum.   

Abstract

PURPOSE: To test the following hypotheses: (1) eyes from patients with human immunodeficiency virus (HIV) have retinal damage that causes subtle field defects, (2) sensitive machine learning classifiers (MLCs) can use these field defects to distinguish fields in HIV patients and normal subjects, and (3) the subtle field defects form meaningful patterns. We have applied supervised MLCs--support vector machine (SVM) and relevance vector machine (RVM)--to determine if visual fields in patients with HIV differ from normal visual fields in HIV-negative controls.
METHODS: HIV-positive patients without visible retinopathy were divided into 2 groups: (1) 38 high-CD4 (H), 48.5 +/- 8.5 years, whose CD4 counts were never below 100; and (2) 35 low-CD4 (L), 46.1 +/- 8.5 years, whose CD4 counts were below 100 at least 6 months. The normal group (N) had 52 age-matched HIV-negative individuals, 46.3 +/- 7.8 years. Standard automated perimetry (SAP) with the 24-2 program was recorded from one eye per individual per group. SVM and RVM were trained and tested with cross-validation to distinguish H from N and L from N. Area under the receiver operating characteristic (AUROC) curve permitted comparison of performance of MLCs. Improvement in performance and identification of subsets of the most important features were sought with feature selection by backward elimination.
RESULTS: SVM and RVM distinguished L from N (L: AUROC = 0.804, N: 0.500, P = .0002 with SVM and L: .800, P = .0002 with RVM) and H from N (H: 0.683, P = .022 with SVM and H: 0.670, P = .038 with RVM). With best-performing subsets derived by backward elimination, SVM and RVM each distinguished L from N (L: 0.843, P < .00005 with SVM and L: 0.870, P < .00005 with RVM) and H from N (H: 0.695, P = .015 with SVM and H: 0.726, P = .007 with RVM). The most important field locations in low-CD4 individuals were mostly superior near the blind spot. The location of important field locations was uncertain in high-CD4 eyes.
CONCLUSIONS: This study has confirmed that low-CD4 eyes have visual field defects and retinal damage. Ranking located important field locations superiorly near the blind spot, implying damage to the retina inferiorly near the optic disc. Though most fields appear normal in high-CD4 eyes, SVM and RVM were sufficiently sensitive to distinguish these eyes from normal eyes with SAP. The location of these defects is not yet defined. These results also validate the use of sensitive MLC techniques to uncover test differences not discernible by human experts.

Entities:  

Mesh:

Year:  2007        PMID: 18427600      PMCID: PMC2258123     

Source DB:  PubMed          Journal:  Trans Am Ophthalmol Soc        ISSN: 0065-9533


  31 in total

1.  Pattern of early visual field loss in HIV-infected patients.

Authors:  P A Sample; D J Plummer; A J Mueller; K I Matsubara; A Sadun; I Grant; W R Freeman
Journal:  Arch Ophthalmol       Date:  1999-06

2.  Contrast sensitivity and color vision in HIV-infected individuals without infectious retinopathy.

Authors:  Kayur H Shah; Gary N Holland; Fei Yu; Mark Van Natta; Steven Nusinowitz
Journal:  Am J Ophthalmol       Date:  2006-08       Impact factor: 5.258

3.  Visual dysfunction without retinitis in patients with acquired immunodeficiency syndrome.

Authors:  J I Quiceno; E Capparelli; A A Sadun; D Munguia; I Grant; A Listhaus; J Crapotta; B Lambert; W R Freeman
Journal:  Am J Ophthalmol       Date:  1992-01-15       Impact factor: 5.258

4.  Artificial neural network analysis of noisy visual field data in glaucoma.

Authors:  D B Henson; S E Spenceley; D R Bull
Journal:  Artif Intell Med       Date:  1997-06       Impact factor: 5.326

5.  In vivo histology of cotton-wool spots using high-resolution optical coherence tomography.

Authors:  Igor Kozak; Dirk-Uwe Bartsch; Lingyun Cheng; William R Freeman
Journal:  Am J Ophthalmol       Date:  2006-04       Impact factor: 5.258

6.  AIDS-related vasculopathy: evidence for oxidative and inflammatory pathways in murine and human AIDS.

Authors:  Reshma S Baliga; Alysia A Chaves; Liang Jing; Leona W Ayers; John A Bauer
Journal:  Am J Physiol Heart Circ Physiol       Date:  2005-05-27       Impact factor: 4.733

7.  Objective analysis of retinal damage in HIV-positive patients in the HAART era using OCT.

Authors:  Igor Kozak; Dirk-Uwe Bartsch; Lingyun Cheng; Brian R Kosobucki; William R Freeman
Journal:  Am J Ophthalmol       Date:  2005-02       Impact factor: 5.258

Review 8.  HIV-associated retinopathy in the HAART era.

Authors:  Daniel E Goldberg; Lindsay M Smithen; Allison Angelilli; William R Freeman
Journal:  Retina       Date:  2005 Jul-Aug       Impact factor: 4.256

9.  Relevance vector machine and support vector machine classifier analysis of scanning laser polarimetry retinal nerve fiber layer measurements.

Authors:  Christopher Bowd; Felipe A Medeiros; Zuohua Zhang; Linda M Zangwill; Jiucang Hao; Te-Won Lee; Terrence J Sejnowski; Robert N Weinreb; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-04       Impact factor: 4.799

10.  Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields.

Authors:  Pamela A Sample; Catherine Boden; Zuohua Zhang; John Pascual; Te-Won Lee; Linda M Zangwill; Robert N Weinreb; Jonathan G Crowston; Esther M Hoffmann; Felipe A Medeiros; Terrence Sejnowski; Michael Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

View more
  13 in total

1.  Association between retinal nerve fiber layer thickness and abnormalities of vision in people with human immunodeficiency virus infection.

Authors:  Partho S Kalyani; Gary N Holland; Amani A Fawzi; Tiago E F Arantes; Fei Yu; Alfredo A Sadun
Journal:  Am J Ophthalmol       Date:  2012-01-15       Impact factor: 5.258

2.  Relationship between retinal nerve fiber layer thickness and driving ability in patients with human immunodeficiency virus infection.

Authors:  Sarah Cheng; Helaina Klein; Dirk-Uwe Bartsch; Igor Kozak; Thomas D Marcotte; William R Freeman
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2011-07-06       Impact factor: 3.117

Review 3.  Ophthalmologic Disease in HIV Infection: Recent Changes in Pathophysiology and Treatment.

Authors:  Michael W Stewart
Journal:  Curr Infect Dis Rep       Date:  2017-10-19       Impact factor: 3.725

4.  Optic nerve head morphology and visual field function in patients with AIDS and without infectious retinitis.

Authors:  Igor Kozak; Alka Ahuja; Sapna Gangaputra; Mark L Van Natta; Jennifer E Thorne; William R Freeman
Journal:  Ocul Immunol Inflamm       Date:  2012-06-14       Impact factor: 3.070

5.  Incidence and long-term outcomes of the human immunodefıciency virus neuroretinal disorder in patients with AIDS.

Authors:  Douglas A Jabs; Lea Drye; Mark L Van Natta; Jennifer E Thorne; Gary N Holland
Journal:  Ophthalmology       Date:  2015-01-16       Impact factor: 12.079

6.  Analysis with support vector machine shows HIV-positive subjects without infectious retinitis have mfERG deficiencies compared to normal eyes.

Authors:  Michael H Goldbaum; Irina Falkenstein; Igor Kozak; Jiucang Hao; Dirk-Uwe Bartsch; Terrance Sejnowski; William R Freeman
Journal:  Trans Am Ophthalmol Soc       Date:  2008

7.  Imaging of long-term retinal damage after resolved cotton wool spots.

Authors:  Maria Laura Gomez; Francesca Mojana; Dirk-Uwe Bartsch; William R Freeman
Journal:  Ophthalmology       Date:  2009-10-07       Impact factor: 12.079

8.  Pattern recognition can detect subtle field defects in eyes of HIV individuals without retinitis under HAART.

Authors:  Michael H Goldbaum; Igor Kozak; Jiucang Hao; Pamela A Sample; TeWon Lee; Igor Grant; William R Freeman
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2010-09-24       Impact factor: 3.117

9.  Retinal Thickening and Photoreceptor Loss in HIV Eyes without Retinitis.

Authors:  Cheryl A Arcinue; Dirk-Uwe Bartsch; Sharif Y El-Emam; Feiyan Ma; Aubrey Doede; Lucie Sharpsten; Maria Laura Gomez; William R Freeman
Journal:  PLoS One       Date:  2015-08-05       Impact factor: 3.240

10.  Retinal Nerve Fiber and Optic Disc Morphology in Patients with Human Immunodeficiency Virus Using the Heidelberg Retina Tomography 3.

Authors:  Dirk-Uwe Bartsch; Igor Kozak; Igor Grant; Victoria L Knudsen; Robert N Weinreb; Byung Ro Lee; William R Freeman
Journal:  PLoS One       Date:  2015-08-10       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.