Literature DB >> 16020775

Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model.

Yuseob Kim1, H Allen Orr.   

Abstract

Fisher and Muller's theory that recombination speeds adaptation by eliminating competition among beneficial mutations has proved a popular explanation for the advantage of sex. Recent theoretical studies have attempted to quantify the speed of adaptation under the Fisher-Muller model, partly in an attempt to understand the role of "clonal interference" in microbial experimental evolution. We reexamine adaptation in sexuals vs. asexuals, using a model of DNA sequence evolution. In this model, a modest number of sites can mutate to beneficial alleles and the fitness effects of these mutations are unequal. We study (1) transition probabilities to different beneficial mutations; (2) waiting times to the first and the last substitutions of beneficial mutations; and (3) trajectories of mean fitness through time. We find that some of these statistics are surprisingly similar between sexuals and asexuals. These results highlight the importance of the choice of substitution model in assessing the Fisher-Muller advantage of sex.

Mesh:

Year:  2005        PMID: 16020775      PMCID: PMC1456838          DOI: 10.1534/genetics.105.045252

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  21 in total

1.  Clonal interference and the evolution of RNA viruses.

Authors:  R Miralles; P J Gerrish; A Moya; S F Elena
Journal:  Science       Date:  1999-09-10       Impact factor: 47.728

2.  The rate of adaptation in asexuals.

Authors:  H A Orr
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

3.  Is the population size of a species relevant to its evolution?

Authors:  J H Gillespie
Journal:  Evolution       Date:  2001-11-11       Impact factor: 3.694

4.  Selection for recombination in small populations.

Authors:  S P Otto; N H Barton
Journal:  Evolution       Date:  2001-10       Impact factor: 3.694

Review 5.  Resolving the paradox of sex and recombination.

Authors:  Sarah P Otto; Thomas Lenormand
Journal:  Nat Rev Genet       Date:  2002-04       Impact factor: 53.242

6.  The distribution of fitness effects among beneficial mutations.

Authors:  H Allen Orr
Journal:  Genetics       Date:  2003-04       Impact factor: 4.562

7.  A minimum on the mean number of steps taken in adaptive walks.

Authors:  H Allen Orr
Journal:  J Theor Biol       Date:  2003-01-21       Impact factor: 2.691

8.  Selective sweeps in the presence of interference among partially linked loci.

Authors:  Yuseob Kim; Wolfgang Stephan
Journal:  Genetics       Date:  2003-05       Impact factor: 4.562

9.  The population genetics of adaptation: the adaptation of DNA sequences.

Authors:  H Allen Orr
Journal:  Evolution       Date:  2002-07       Impact factor: 3.694

10.  Fitness effects of fixed beneficial mutations in microbial populations.

Authors:  Daniel E Rozen; J Arjan G M de Visser; Philip J Gerrish
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

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  41 in total

1.  Stickbreaking: a novel fitness landscape model that harbors epistasis and is consistent with commonly observed patterns of adaptive evolution.

Authors:  Anna C Nagel; Paul Joyce; Holly A Wichman; Craig R Miller
Journal:  Genetics       Date:  2011-11-17       Impact factor: 4.562

2.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

Review 3.  Beneficial mutations and the dynamics of adaptation in asexual populations.

Authors:  Paul D Sniegowski; Philip J Gerrish
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

4.  Mutational effects and population dynamics during viral adaptation challenge current models.

Authors:  Craig R Miller; Paul Joyce; Holly A Wichman
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

5.  Lack of evidence for sign epistasis between beneficial mutations in an RNA bacteriophage.

Authors:  Andrea J Betancourt
Journal:  J Mol Evol       Date:  2010-10-12       Impact factor: 2.395

6.  H. J. Muller and the "competition hoax".

Authors:  James F Crow
Journal:  Genetics       Date:  2006-06       Impact factor: 4.562

7.  The speed of evolution and maintenance of variation in asexual populations.

Authors:  Michael M Desai; Daniel S Fisher; Andrew W Murray
Journal:  Curr Biol       Date:  2007-03-06       Impact factor: 10.834

8.  Adaptation of a quantitative trait to a moving optimum.

Authors:  Michael Kopp; Joachim Hermisson
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

9.  Clonal interference in large populations.

Authors:  Su-Chan Park; Joachim Krug
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-05       Impact factor: 11.205

10.  Beneficial mutation selection balance and the effect of linkage on positive selection.

Authors:  Michael M Desai; Daniel S Fisher
Journal:  Genetics       Date:  2007-05-04       Impact factor: 4.562

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