Literature DB >> 12468295

A minimum on the mean number of steps taken in adaptive walks.

H Allen Orr1.   

Abstract

I consider the adaptation of a DNA sequence when mutant fitnesses are drawn randomly from a probability distribution. I focus on "gradient" adaptation in which the population jumps to the best mutant sequence available at each substitution. Given a random starting point, I derive the distribution of the number of substitutions that occur during adaptive walks to a locally optimal sequence. I show that the mean walk length is a constant:L = e-1, where e approximately 2.72. I argue that this result represents a limit on what is possible under any form of adaptation. No adaptive algorithm on any fitness landscape can arrive at a local optimum in fewer than a mean of L = e-1 steps when starting from a random sequence. Put differently, evolution must try out at least e wild-type sequences during an average bout of adaptation.

Mesh:

Year:  2003        PMID: 12468295     DOI: 10.1006/jtbi.2003.3161

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  20 in total

1.  The distribution of fitness effects among beneficial mutations.

Authors:  H Allen Orr
Journal:  Genetics       Date:  2003-04       Impact factor: 4.562

2.  Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model.

Authors:  Yuseob Kim; H Allen Orr
Journal:  Genetics       Date:  2005-07-14       Impact factor: 4.562

3.  Identifying functionally important mutations from phenotypically diverse sequence data.

Authors:  Kyle Jensen; Hal Alper; Curt Fischer; Gregory Stephanopoulos
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

4.  A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation.

Authors:  Paul Joyce; Darin R Rokyta; Craig J Beisel; H Allen Orr
Journal:  Genetics       Date:  2008-09-14       Impact factor: 4.562

5.  The dynamics of adaptation on correlated fitness landscapes.

Authors:  Sergey Kryazhimskiy; Gasper Tkacik; Joshua B Plotkin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-26       Impact factor: 11.205

6.  Testing the extreme value domain of attraction for distributions of beneficial fitness effects.

Authors:  Craig J Beisel; Darin R Rokyta; Holly A Wichman; Paul Joyce
Journal:  Genetics       Date:  2007-06-11       Impact factor: 4.562

7.  Multiple adaptive substitutions during evolution in novel environments.

Authors:  Kavita Jain; Sarada Seetharaman
Journal:  Genetics       Date:  2011-09-06       Impact factor: 4.562

8.  From adaptive dynamics to adaptive walks.

Authors:  Anna Kraut; Anton Bovier
Journal:  J Math Biol       Date:  2019-07-26       Impact factor: 2.259

9.  Genotypic Complexity of Fisher's Geometric Model.

Authors:  Sungmin Hwang; Su-Chan Park; Joachim Krug
Journal:  Genetics       Date:  2017-04-26       Impact factor: 4.562

10.  The properties of adaptive walks in evolving populations of fungus.

Authors:  Sijmen E Schoustra; Thomas Bataillon; Danna R Gifford; Rees Kassen
Journal:  PLoS Biol       Date:  2009-11-24       Impact factor: 8.029

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