Literature DB >> 20308101

Beneficial mutations and the dynamics of adaptation in asexual populations.

Paul D Sniegowski1, Philip J Gerrish.   

Abstract

We discuss the dynamics of adaptive evolution in asexual (clonal) populations. The classical 'periodic selection' model of clonal evolution assumed that beneficial mutations are very rare and therefore substitute unfettered into populations as occasional, isolated events. Newer models allow for the possibility that beneficial mutations are sufficiently common to coexist and compete for fixation within populations. Experimental evolution studies in microbes provide empirical support for stochastic models in which both selection and mutation are strong effects and clones compete for fixation; however, the relative importance of competition among clones bearing mutations of different selective effects versus competition among clones bearing multiple mutations remains unresolved. We provide some new theoretical results, moreover, suggesting that population dynamics consistent with the periodic selection model can arise even in a deterministic model that can accommodate a very high beneficial mutation rate.

Mesh:

Year:  2010        PMID: 20308101      PMCID: PMC2871819          DOI: 10.1098/rstb.2009.0290

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  66 in total

1.  Fitness effects of advantageous mutations in evolving Escherichia coli populations.

Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Clonal interference and the evolution of RNA viruses.

Authors:  R Miralles; P J Gerrish; A Moya; S F Elena
Journal:  Science       Date:  1999-09-10       Impact factor: 47.728

3.  Different trajectories of parallel evolution during viral adaptation.

Authors:  H A Wichman; M R Badgett; L A Scott; C M Boulianne; J J Bull
Journal:  Science       Date:  1999-07-16       Impact factor: 47.728

4.  Diminishing returns of population size in the rate of RNA virus adaptation.

Authors:  R Miralles; A Moya; S F Elena
Journal:  J Virol       Date:  2000-04       Impact factor: 5.103

5.  The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli.

Authors:  L Notley-McRobb; T Ferenci
Journal:  Environ Microbiol       Date:  1999-02       Impact factor: 5.491

6.  Genomic evolution during a 10,000-generation experiment with bacteria.

Authors:  D Papadopoulos; D Schneider; J Meier-Eiss; W Arber; R E Lenski; M Blot
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

7.  RNA virus evolution via a fitness-space model.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-06-03       Impact factor: 9.161

8.  Experimental analysis of molecular events during mutational periodic selections in bacterial evolution.

Authors:  L Notley-McRobb; T Ferenci
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

9.  The rhythm of microbial adaptation.

Authors:  P Gerrish
Journal:  Nature       Date:  2001-09-20       Impact factor: 49.962

10.  Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations.

Authors:  L Notley-McRobb; T Ferenci
Journal:  Environ Microbiol       Date:  1999-02       Impact factor: 5.491

View more
  80 in total

1.  Real time forecasting of near-future evolution.

Authors:  Philip J Gerrish; Paul D Sniegowski
Journal:  J R Soc Interface       Date:  2012-04-18       Impact factor: 4.118

2.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

3.  The population genetics of mutations: good, bad and indifferent.

Authors:  Laurence Loewe; William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

4.  The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans.

Authors:  Katia Koelle; David A Rasmussen
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

5.  Accurate reconstruction of the temporal order of mutations in neoplastic progression.

Authors:  Kathleen Sprouffske; John W Pepper; Carlo C Maley
Journal:  Cancer Prev Res (Phila)       Date:  2011-04-13

6.  Genomic mutation rates that neutralize adaptive evolution and natural selection.

Authors:  Philip J Gerrish; Alexandre Colato; Paul D Sniegowski
Journal:  J R Soc Interface       Date:  2013-05-29       Impact factor: 4.118

7.  Rate of adaptation in sexuals and asexuals: a solvable model of the Fisher-Muller effect.

Authors:  Su-Chan Park; Joachim Krug
Journal:  Genetics       Date:  2013-08-26       Impact factor: 4.562

Review 8.  Hypermutation and stress adaptation in bacteria.

Authors:  R Jayaraman
Journal:  J Genet       Date:  2011-08       Impact factor: 1.166

9.  Essential is not irreplaceable: fitness dynamics of experimental E. coli RNase P RNA heterologous replacement.

Authors:  Jasmine L Loveland; Jocelyn Rice; Paula C G Turrini; Michelle Lizotte-Waniewski; Robert L Dorit
Journal:  J Mol Evol       Date:  2014-09-30       Impact factor: 2.395

10.  Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance.

Authors:  Elsa Rousseau; Mélanie Bonneault; Frédéric Fabre; Benoît Moury; Ludovic Mailleret; Frédéric Grognard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-24       Impact factor: 6.237

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.