Literature DB >> 10835413

The rate of adaptation in asexuals.

H A Orr1.   

Abstract

I study the population genetics of adaptation in asexuals. I show that the rate of adaptive substitution in an asexual species or nonrecombining chromosome region is a bell-shaped function of the mutation rate: at some point, increasing the mutation rate decreases the rate of substitution. Curiously, the mutation rate that maximizes the rate of adaptation depends solely on the strength of selection against deleterious mutations. In particular, adaptation is fastest when the genomic rate of mutation, U, equals the harmonic mean of selection coefficients against deleterious mutations, where we assume that selection for favorable alleles is milder than that against deleterious ones. This simple result is independent of the shape of the distribution of effects among favorable and deleterious mutations, population size, and the action of clonal interference. In the course of this work, I derive an approximation to the probability of fixation of a favorable mutation in an asexual genome or nonrecombining chromosome region in which both favorable and deleterious mutations occur.

Mesh:

Year:  2000        PMID: 10835413      PMCID: PMC1461099     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  20 in total

Review 1.  Terumi Mukai and the riddle of deleterious mutation rates.

Authors:  P D Keightley; A Eyre-Walker
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

2.  Clonal interference and the evolution of RNA viruses.

Authors:  R Miralles; P J Gerrish; A Moya; S F Elena
Journal:  Science       Date:  1999-09-10       Impact factor: 47.728

3.  The approach to mutation-selection balance in an infinite asexual population, and the evolution of mutation rates.

Authors:  T Johnson
Journal:  Proc Biol Sci       Date:  1999-12-07       Impact factor: 5.349

4.  Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations.

Authors:  T Johnson
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

5.  A constant rate of spontaneous mutation in DNA-based microbes.

Authors:  J W Drake
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

6.  Evolutionarily stable mutation rates.

Authors:  K J Dawson
Journal:  J Theor Biol       Date:  1998-09-07       Impact factor: 2.691

7.  The fate of competing beneficial mutations in an asexual population.

Authors:  P J Gerrish; R E Lenski
Journal:  Genetica       Date:  1998       Impact factor: 1.082

8.  The dynamics of infinitesimally rare alleles, applied to the evolution of mutation rates and the expression of deleterious mutations.

Authors:  K J Dawson
Journal:  Theor Popul Biol       Date:  1999-02       Impact factor: 1.570

9.  The accumulation of deleterious genes in a population--Muller's Ratchet.

Authors:  J Haigh
Journal:  Theor Popul Biol       Date:  1978-10       Impact factor: 1.570

10.  The effect of linkage on limits to artificial selection.

Authors:  W G Hill; A Robertson
Journal:  Genet Res       Date:  1966-12       Impact factor: 1.588

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  98 in total

1.  Fitness effects of advantageous mutations in evolving Escherichia coli populations.

Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  The evolution of mutator genes in bacterial populations: the roles of environmental change and timing.

Authors:  Mark M Tanaka; Carl T Bergstrom; Bruce R Levin
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

3.  The speed of adaptation in large asexual populations.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

4.  Establishment of new mutations in changing environments.

Authors:  Stephan Peischl; Mark Kirkpatrick
Journal:  Genetics       Date:  2012-04-27       Impact factor: 4.562

5.  Pathways to extinction: beyond the error threshold.

Authors:  Susanna C Manrubia; Esteban Domingo; Ester Lázaro
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

Review 6.  Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies.

Authors:  Rafael Sanjuán
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

7.  Mutational effects and population dynamics during viral adaptation challenge current models.

Authors:  Craig R Miller; Paul Joyce; Holly A Wichman
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

8.  The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans.

Authors:  Katia Koelle; David A Rasmussen
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

9.  Mutational and fitness landscapes of an RNA virus revealed through population sequencing.

Authors:  Ashley Acevedo; Leonid Brodsky; Raul Andino
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

10.  Nucleotide polymorphism and within-gene recombination in Daphnia magna and D. pulex, two cyclical parthenogens.

Authors:  Christoph R Haag; Seanna J McTaggart; Anaïs Didier; Tom J Little; Deborah Charlesworth
Journal:  Genetics       Date:  2009-03-18       Impact factor: 4.562

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