Literature DB >> 22371564

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Benjamin H Good1, Igor M Rouzine, Daniel J Balick, Oskar Hallatschek, Michael M Desai.   

Abstract

When large asexual populations adapt, competition between simultaneously segregating mutations slows the rate of adaptation and restricts the set of mutations that eventually fix. This phenomenon of interference arises from competition between mutations of different strengths as well as competition between mutations that arise on different fitness backgrounds. Previous work has explored each of these effects in isolation, but the way they combine to influence the dynamics of adaptation remains largely unknown. Here, we describe a theoretical model to treat both aspects of interference in large populations. We calculate the rate of adaptation and the distribution of fixed mutational effects accumulated by the population. We focus particular attention on the case when the effects of beneficial mutations are exponentially distributed, as well as on a more general class of exponential-like distributions. In both cases, we show that the rate of adaptation and the influence of genetic background on the fixation of new mutants is equivalent to an effective model with a single selection coefficient and rescaled mutation rate, and we explicitly calculate these effective parameters. We find that the effective selection coefficient exactly coincides with the most common fixed mutational effect. This equivalence leads to an intuitive picture of the relative importance of different types of interference effects, which can shift dramatically as a function of the population size, mutation rate, and the underlying distribution of fitness effects.

Mesh:

Year:  2012        PMID: 22371564      PMCID: PMC3323973          DOI: 10.1073/pnas.1119910109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

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Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Clonal interference and the evolution of RNA viruses.

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3.  RNA virus evolution via a fitness-space model.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-06-03       Impact factor: 9.161

4.  The distribution of fitness effects among beneficial mutations.

Authors:  H Allen Orr
Journal:  Genetics       Date:  2003-04       Impact factor: 4.562

5.  Sex releases the speed limit on evolution.

Authors:  Nick Colegrave
Journal:  Nature       Date:  2002-12-12       Impact factor: 49.962

6.  The solitary wave of asexual evolution.

Authors:  Igor M Rouzine; John Wakeley; John M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

7.  Fitness effects of fixed beneficial mutations in microbial populations.

Authors:  Daniel E Rozen; J Arjan G M de Visser; Philip J Gerrish
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

8.  The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus.

Authors:  Rafael Sanjuán; Andrés Moya; Santiago F Elena
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

9.  The speed of adaptation in large asexual populations.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

10.  Evolution of human immunodeficiency virus under selection and weak recombination.

Authors:  I M Rouzine; J M Coffin
Journal:  Genetics       Date:  2005-03-02       Impact factor: 4.562

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  84 in total

1.  Chance and risk in adaptive evolution.

Authors:  Michael Lässig
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

2.  The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans.

Authors:  Katia Koelle; David A Rasmussen
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

3.  Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves.

Authors:  Oskar Hallatschek; Lukas Geyrhofer
Journal:  Genetics       Date:  2016-01-27       Impact factor: 4.562

4.  The dynamics of genetic draft in rapidly adapting populations.

Authors:  Katya Kosheleva; Michael M Desai
Journal:  Genetics       Date:  2013-09-03       Impact factor: 4.562

5.  Rate of adaptation in sexuals and asexuals: a solvable model of the Fisher-Muller effect.

Authors:  Su-Chan Park; Joachim Krug
Journal:  Genetics       Date:  2013-08-26       Impact factor: 4.562

Review 6.  Effective models and the search for quantitative principles in microbial evolution.

Authors:  Benjamin H Good; Oskar Hallatschek
Journal:  Curr Opin Microbiol       Date:  2018-12-06       Impact factor: 7.934

Review 7.  The spectrum of adaptive mutations in experimental evolution.

Authors:  Gregory I Lang; Michael M Desai
Journal:  Genomics       Date:  2014-09-28       Impact factor: 5.736

8.  The impact of macroscopic epistasis on long-term evolutionary dynamics.

Authors:  Benjamin H Good; Michael M Desai
Journal:  Genetics       Date:  2014-11-12       Impact factor: 4.562

9.  The evolutionarily stable distribution of fitness effects.

Authors:  Daniel P Rice; Benjamin H Good; Michael M Desai
Journal:  Genetics       Date:  2015-03-10       Impact factor: 4.562

10.  Directional Selection Rather Than Functional Constraints Can Shape the G Matrix in Rapidly Adapting Asexuals.

Authors:  Kevin Gomez; Jason Bertram; Joanna Masel
Journal:  Genetics       Date:  2018-12-17       Impact factor: 4.562

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