Literature DB >> 12702694

The distribution of fitness effects among beneficial mutations.

H Allen Orr1.   

Abstract

We know little about the distribution of fitness effects among new beneficial mutations, a problem that partly reflects the rarity of these changes. Surprisingly, though, population genetic theory allows us to predict what this distribution should look like under fairly general assumptions. Using extreme value theory, I derive this distribution and show that it has two unexpected properties. First, the distribution of beneficial fitness effects at a gene is exponential. Second, the distribution of beneficial effects at a gene has the same mean regardless of the fitness of the present wild-type allele. Adaptation from new mutations is thus characterized by a kind of invariance: natural selection chooses from the same spectrum of beneficial effects at a locus independent of the fitness rank of the present wild type. I show that these findings are reasonably robust to deviations from several assumptions. I further show that one can back calculate the mean size of new beneficial mutations from the observed mean size of fixed beneficial mutations.

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Year:  2003        PMID: 12702694      PMCID: PMC1462510     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  17 in total

1.  Fitness effects of advantageous mutations in evolving Escherichia coli populations.

Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Models of experimental evolution: the role of genetic chance and selective necessity.

Authors:  L M Wahl; D C Krakauer
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

3.  Adaptation and the cost of complexity.

Authors:  H A Orr
Journal:  Evolution       Date:  2000-02       Impact factor: 3.694

4.  Profiles of adaptation in two similar viruses.

Authors:  K K Holder; J J Bull
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

5.  The rhythm of microbial adaptation.

Authors:  P Gerrish
Journal:  Nature       Date:  2001-09-20       Impact factor: 49.962

6.  A minimum on the mean number of steps taken in adaptive walks.

Authors:  H Allen Orr
Journal:  J Theor Biol       Date:  2003-01-21       Impact factor: 2.691

7.  The population genetics of adaptation: the adaptation of DNA sequences.

Authors:  H Allen Orr
Journal:  Evolution       Date:  2002-07       Impact factor: 3.694

8.  Fitness effects of fixed beneficial mutations in microbial populations.

Authors:  Daniel E Rozen; J Arjan G M de Visser; Philip J Gerrish
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

9.  Natural selection and the concept of a protein space.

Authors:  J M Smith
Journal:  Nature       Date:  1970-02-07       Impact factor: 49.962

10.  A simple stochastic gene substitution model.

Authors:  J H Gillespie
Journal:  Theor Popul Biol       Date:  1983-04       Impact factor: 1.570

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  117 in total

1.  Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock.

Authors:  Gwenaël Piganeau; Adam Eyre-Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-18       Impact factor: 11.205

2.  The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus.

Authors:  Rafael Sanjuán; Andrés Moya; Santiago F Elena
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

3.  The speed of adaptation in large asexual populations.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

4.  Influence of dominance, leptokurtosis and pleiotropy of deleterious mutations on quantitative genetic variation at mutation-selection balance.

Authors:  Xu-Sheng Zhang; Jinliang Wang; William G Hill
Journal:  Genetics       Date:  2004-01       Impact factor: 4.562

5.  Stickbreaking: a novel fitness landscape model that harbors epistasis and is consistent with commonly observed patterns of adaptive evolution.

Authors:  Anna C Nagel; Paul Joyce; Holly A Wichman; Craig R Miller
Journal:  Genetics       Date:  2011-11-17       Impact factor: 4.562

6.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

7.  The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens.

Authors:  Michael J McDonald; Tim F Cooper; Hubertus J E Beaumont; Paul B Rainey
Journal:  Biol Lett       Date:  2010-07-21       Impact factor: 3.703

Review 8.  The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts.

Authors:  R Craig MacLean; Alex R Hall; Gabriel G Perron; Angus Buckling
Journal:  Nat Rev Genet       Date:  2010-06       Impact factor: 53.242

9.  The number of mutations selected during adaptation in a laboratory population of Saccharomyces cerevisiae.

Authors:  Clifford Zeyl
Journal:  Genetics       Date:  2005-03-02       Impact factor: 4.562

10.  Molecular Origins of Complex Heritability in Natural Genotype-to-Phenotype Relationships.

Authors:  Christopher M Jakobson; Daniel F Jarosz
Journal:  Cell Syst       Date:  2019-05-01       Impact factor: 10.304

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